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Operating Systems Linux Comapring columns in 2 files and printing the values that differ. Post 302959371 by Syeda Sumayya on Sunday 1st of November 2015 11:37:24 PM
Old 11-02-2015
Comapring columns in 2 files and printing the values that differ.

I have a file (file-1) that looks like this,
Code:
DIP-10097N|refseq:NP_416170|uniprotkb:P30015
DIP-10117N|refseq:NP_414973|uniprotkb:P08177
DIP-10168N|refseq:NP_418766|uniprotkb:P15005
DIP-10199N|refseq:NP_415632|uniprotkb:P30958
DIP-10358N|refseq:NP_418659|uniprotkb:P28903
DIP-10440N|refseq:NP_289596|uniprotkb:P20082
DIP-10441N|refseq:NP_417502|uniprotkb:P20083
DIP-10441N|refseq:NP_417502|uniprotkb:P20083
DIP-10467N|refseq:NP_415423|uniprotkb:P09373
DIP-10469N|refseq:NP_418386|uniprotkb:P32674
DIP-10562N|refseq:NP_418370|uniprotkb:P17888
DIP-10582N|refseq:NP_414864|uniprotkb:P77743
DIP-10592N|refseq:NP_415819|uniprotkb:P37344

and another (file-2) which looks like this,
Code:
DIP-10331N|refseq:NP_311078|uniprotkb:P12638    DIP-10117N|refseq:NP_414973|uniprotkb:P08177
DIP-10331N|refseq:NP_311078|uniprotkb:P12638    DIP-10840N|refseq:NP_414640|uniprotkb:P10408
DIP-1025N|refseq:NP_414574|uniprotkb:P00968     DIP-10097N|refseq:NP_416170|uniprotkb:P30015
DIP-10467N|refseq:NP_415423|uniprotkb:P09373    DIP-10097N|refseq:NP_416170|uniprotkb:P30015
DIP-10117N|refseq:NP_414973|uniprotkb:P08177    DIP-10117N|refseq:NP_414973|uniprotkb:P08177
DIP-10117N|refseq:NP_414973|uniprotkb:P08177    DIP-10750N|refseq:NP_289799|uniprotkb:P02410
DIP-10117N|refseq:NP_414973|uniprotkb:P08177    DIP-10757N|refseq:NP_288150|uniprotkb:P02421

In output I want to print the contents of file-1 plus the value in either column of file-2 that has the same value as that of file-1 in the other column. Like this,
Code:
DIP-10097N|refseq:NP_416170|uniprotkb:P30015 DIP-1025N|refseq:NP_414574|uniprotkb:P00968
DIP-10097N|refseq:NP_416170|uniprotkb:P30015 DIP-10467N|refseq:NP_415423|uniprotkb:P09373
DIP-10117N|refseq:NP_414973|uniprotkb:P08177 DIP-10117N|refseq:NP_414973|uniprotkb:P08177
DIP-10117N|refseq:NP_414973|uniprotkb:P08177 DIP-10750N|refseq:NP_289799|uniprotkb:P02410
DIP-10117N|refseq:NP_414973|uniprotkb:P08177    DIP-10757N|refseq:NP_288150|uniprotkb:P02421
DIP-10117N|refseq:NP_414973|uniprotkb:P08177 DIP-10331N|refseq:NP_311078|uniprotkb:P12638
DIP-10467N|refseq:NP_415423|uniprotkb:P09373 DIP-10097N|refseq:NP_416170|uniprotkb:P30015

Any help would be highly appreciated.

Last edited by Syeda Sumayya; 11-02-2015 at 02:06 AM..
 

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TABS(1) 						    BSD General Commands Manual 						   TABS(1)

NAME
tabs -- set terminal tabs SYNOPSIS
tabs [-n | -a | -a2 | -c | -c2 | -c3 | -f | -p | -s | -u] [+m[n]] [-T type] tabs [-T type] [+[n]] n1[,n2,...] DESCRIPTION
The tabs utility displays a series of characters that clear the hardware terminal tab settings then initialises tab stops at specified posi- tions, and optionally adjusts the margin. In the first synopsis form, the tab stops set depend on the command line options used, and may be one of the predefined formats or at regular intervals. In the second synopsis form, tab stops are set at positions n1, n2, etc. If a position is preceded by a '+', it is relative to the previous position set. No more than 20 positions may be specified. If no tab stops are specified, the ``standard'' UNIX tab width of 8 is used. The options are as follows: -n Set a tab stop every n columns. If n is 0, the tab stops are cleared but no new ones are set. -a Assembler format (columns 1, 10, 16, 36, 72). -a2 Assembler format (columns 1, 10, 16, 40, 72). -c COBOL normal format (columns 1, 8, 12, 16, 20, 55) -c2 COBOL compact format (columns 1, 6, 10, 14, 49) -c3 COBOL compact format (columns 1, 6, 10, 14, 18, 22, 26, 30, 34, 38, 42, 46, 50, 54, 58, 62, 67). -f FORTRAN format (columns 1, 7, 11, 15, 19, 23). -p PL/1 format (columns 1, 5, 9, 13, 17, 21, 25, 29, 33, 37, 41, 45, 49, 53, 57, 61). -s SNOBOL format (columns 1, 10, 55). -u Assembler format (columns 1, 12, 20, 44). +m[n], +[n] Set an n character left margin, or 10 if n is omitted. -T type Output escape sequence for the terminal type type. ENVIRONMENT
The LANG, LC_ALL, LC_CTYPE and TERM environment variables affect the execution of tabs as described in environ(7). The -T option overrides the setting of the TERM environment variable. If neither TERM nor the -T option are present, tabs will fail. EXIT STATUS
The tabs utility exits 0 on success, and >0 if an error occurs. SEE ALSO
expand(1), stty(1), tput(1), unexpand(1), termcap(5) STANDARDS
The tabs utility conforms to IEEE Std 1003.1-2001 (``POSIX.1''). HISTORY
A tabs utility appeared in PWB UNIX. This implementation was introduced in FreeBSD 5.0. BUGS
The current termcap(5) database does not define the 'ML' (set left soft margin) capability for any terminals. BSD
May 20, 2002 BSD
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