Sponsored Content
Operating Systems Linux Comapring columns in 2 files and printing the values that differ. Post 302959371 by Syeda Sumayya on Sunday 1st of November 2015 11:37:24 PM
Old 11-02-2015
Comapring columns in 2 files and printing the values that differ.

I have a file (file-1) that looks like this,
Code:
DIP-10097N|refseq:NP_416170|uniprotkb:P30015
DIP-10117N|refseq:NP_414973|uniprotkb:P08177
DIP-10168N|refseq:NP_418766|uniprotkb:P15005
DIP-10199N|refseq:NP_415632|uniprotkb:P30958
DIP-10358N|refseq:NP_418659|uniprotkb:P28903
DIP-10440N|refseq:NP_289596|uniprotkb:P20082
DIP-10441N|refseq:NP_417502|uniprotkb:P20083
DIP-10441N|refseq:NP_417502|uniprotkb:P20083
DIP-10467N|refseq:NP_415423|uniprotkb:P09373
DIP-10469N|refseq:NP_418386|uniprotkb:P32674
DIP-10562N|refseq:NP_418370|uniprotkb:P17888
DIP-10582N|refseq:NP_414864|uniprotkb:P77743
DIP-10592N|refseq:NP_415819|uniprotkb:P37344

and another (file-2) which looks like this,
Code:
DIP-10331N|refseq:NP_311078|uniprotkb:P12638    DIP-10117N|refseq:NP_414973|uniprotkb:P08177
DIP-10331N|refseq:NP_311078|uniprotkb:P12638    DIP-10840N|refseq:NP_414640|uniprotkb:P10408
DIP-1025N|refseq:NP_414574|uniprotkb:P00968     DIP-10097N|refseq:NP_416170|uniprotkb:P30015
DIP-10467N|refseq:NP_415423|uniprotkb:P09373    DIP-10097N|refseq:NP_416170|uniprotkb:P30015
DIP-10117N|refseq:NP_414973|uniprotkb:P08177    DIP-10117N|refseq:NP_414973|uniprotkb:P08177
DIP-10117N|refseq:NP_414973|uniprotkb:P08177    DIP-10750N|refseq:NP_289799|uniprotkb:P02410
DIP-10117N|refseq:NP_414973|uniprotkb:P08177    DIP-10757N|refseq:NP_288150|uniprotkb:P02421

In output I want to print the contents of file-1 plus the value in either column of file-2 that has the same value as that of file-1 in the other column. Like this,
Code:
DIP-10097N|refseq:NP_416170|uniprotkb:P30015 DIP-1025N|refseq:NP_414574|uniprotkb:P00968
DIP-10097N|refseq:NP_416170|uniprotkb:P30015 DIP-10467N|refseq:NP_415423|uniprotkb:P09373
DIP-10117N|refseq:NP_414973|uniprotkb:P08177 DIP-10117N|refseq:NP_414973|uniprotkb:P08177
DIP-10117N|refseq:NP_414973|uniprotkb:P08177 DIP-10750N|refseq:NP_289799|uniprotkb:P02410
DIP-10117N|refseq:NP_414973|uniprotkb:P08177    DIP-10757N|refseq:NP_288150|uniprotkb:P02421
DIP-10117N|refseq:NP_414973|uniprotkb:P08177 DIP-10331N|refseq:NP_311078|uniprotkb:P12638
DIP-10467N|refseq:NP_415423|uniprotkb:P09373 DIP-10097N|refseq:NP_416170|uniprotkb:P30015

Any help would be highly appreciated.

Last edited by Syeda Sumayya; 11-02-2015 at 02:06 AM..
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Columns comparision of two large size files and printing the difference

Hi Experts, My requirement is to compare the second field/column in two files, if the second column is same in both the files then compare the first field. If the first is not matching then print the first and second fields of both the files. first file (a .txt) < 1210018971FF0000,... (6 Replies)
Discussion started by: krao
6 Replies

2. UNIX for Dummies Questions & Answers

Comparing the 2nd column in two different files and printing corresponding 9th columns in new file

Dear Gurus, I am very new to UNIX. I appreciate your help to manage my files. I have 16 files with equal number of columns in it. Each file has 9 columns separated by space. I need to compare the values in the second column of first file and obtain the corresponding value in the 9th column... (12 Replies)
Discussion started by: Unilearn
12 Replies

3. UNIX for Dummies Questions & Answers

Comparing two text files by a column and printing values that do not match

I have two text files where the first three columns are exactly the same. I want to compare the fourth column of the text files and if the values are different, print that row into a new output file. How do I go about doing that? File 1: 100 rs3794811 0.01 0.3434 100 rs8066551 0.01... (8 Replies)
Discussion started by: evelibertine
8 Replies

4. Shell Programming and Scripting

Sum up values of columns in 4 files using shell script

I am new to shell script.I have records like below in 4 different files which have about 10000 records each, all records unique and sorted based on column 2. 1 2 3 4 5 6 --------------------------- SR|1010478|000044590|1|0|0| SR|1014759|000105790|1|0|0| SR|1016609|000108901|1|0|0|... (2 Replies)
Discussion started by: reach.sree@gmai
2 Replies

5. UNIX for Dummies Questions & Answers

Comparing two test files and printing out the values that do not match

Hi, I have two text files with matching first columns. Some of the values in the second column do not match. I want to write a script to print out the rows (only the first column) where the values in the second column do not match. Example: Input 1 A 1 B 2 C 3 D 4 Input 2 A 2 B 2... (6 Replies)
Discussion started by: evelibertine
6 Replies

6. UNIX for Dummies Questions & Answers

Printing all the values in the middle of two columns

Hi, I have a tab delimited text file with three columns: Input: 1 25734 25737 1 32719 32724 1 59339 59342 1 59512 59513 1 621740 621745 For each row of the text file I want to print out all the values between the second and third columns, including them. The... (3 Replies)
Discussion started by: evelibertine
3 Replies

7. Shell Programming and Scripting

Common values in 2 columns in 2 files

Hello, Suppose I have these 2 tab delimited files, where the second column in first file contains matching values from first column of the second file, I would like to get an output like this: File A 1 A 2 B 3 C File B A Apple C Cinnabon B Banana I would like... (1 Reply)
Discussion started by: Mohamed EL Hadi
1 Replies

8. Shell Programming and Scripting

Comparing same column from two files, printing whole row with matching values

First I'd like to apologize if I opened a thread which is already open somewhere. I did a bit of searching but could quite find what I was looking for, so I will try to explaing what I need. I'm writing a script on our server, got to a point where I have two files with results. Example: File1... (6 Replies)
Discussion started by: mitabrev83
6 Replies

9. Shell Programming and Scripting

Comparing two columns in two files and printing a third based on a match

Hello all, First post here. I did not notice a previous post to help me down the right path. I am looking to compare a column in a CSV file against another file (which is not a column match one for one) but more or less when a match is made, I would like to append a third column that contains a... (17 Replies)
Discussion started by: dis0wned
17 Replies

10. Shell Programming and Scripting

Match value in two files and replace values in selected columns

The purpose is to check if values for column 3 and 4 in file1 match with column 1 in file2. If any value match do: 1) Replace values in file2 for column 2 and 3 using the information of file1 columns 5 and 6 2) Replace string ($1,1,5) and string ($1,6,5) in file2 with values of columns 7... (8 Replies)
Discussion started by: jiam912
8 Replies
PCII(4) 						   BSD Kernel Interfaces Manual 						   PCII(4)

NAME
pcii -- National Instruments PCIIA GPIB controller driver SYNOPSIS
device pcii In /boot/device.hints: hint.pcii.0.at="isa" hint.pcii.0.port="0x2e1" hint.pcii.0.irq="7" hint.pcii.0.drq="1" DESCRIPTION
The pcii driver provides support for driving an IEEE-488 bus, also called IEC-625 (or just "IEC bus"), or HP-IB (Hewlett Packard Instrument Bus), or GPIB (General Purpose Instrument Bus). The driver supports National Instruments PCIIA cards (sometimes also refered to as PC2A) and compatibles. These cards use a NEC uPD7210 controller IC as the main interface between the host computer and the instrument bus. IO memory space layout The PCIIA cards use a very specific IO memory space allocation layout. The address bits A0 through A9 (which have traditionally been the only address bits evaluated on IBM PC XT extension cards) are hardwired to address 0x2e1. Bits A10 through A12 are used by the uPD7210 reg- ister select lines. This makes the individual 7210 registers being 0x400 bytes apart in the ISA bus address space. Address bits A13 and A14 are compared to a DIP switch setting on the card, allowing for up to 4 different cards being installed (at base addresses 0x2e1, 0x22e1, 0x42e1, and 0x62e1, respectively). A15 has been used to select an optional on-board time-of-day clock chip (MM58167A) on the original PCIIA rather than the uPD7210 (which is not implemented on later boards and clones). Finally, the IO addresses 0x2f0 ... 0x2f7 are used for a special interrupt handling feature (re-enable interrupts so the IRQ can be shared), where actually only address 0x2f0 plus the actual IRQ level is required for each card. Some clones do not appear to require this special IRQ handling, and are thus likely to not support the shared IRQ feature. Only the base address of the card needs to be specified in the ISA device hints; the driver takes care to derive all other IO addresses needed during the probe phase. Supported cards The following cards are known to be supported: o B&C Microsystems PC488A-0 o National Instruments GPIB-PCII/PCIIA (in PCIIa mode) o Axiom AX5488 SEE ALSO
gpib(3), gpib(4), device.hints(5) HISTORY
The pcii driver was written by Poul-Henning Kamp, and first appeared in FreeBSD 5.4. AUTHORS
This manual page was written by Jorg Wunsch. BSD
January 24, 2010 BSD
All times are GMT -4. The time now is 06:24 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy