11-01-2015
Quote:
Originally Posted by
syg3434
I have tried the code that you suggest, but it also has the same problem.
However, when I am trying to run a single simulation, "qsub" works well.
If I want to run the "runAll.sh" file, I use a command which is "qsub runAll.sh".
I think if I utilize appropriate options for qsub command, it can help to solve the issue.
But, it is hard to guess which option is appropriate for the simulation.
Could you suggest any qsub options for submitting this sh file?
Thanks a lot!
It appears that you completely ignored:
Quote:
After you set and exported PATH to include the directory in which you have installed qsub, ...
in my last response. I can't suggest anything on how to use
qsub other than to try the code that you said is already working. I don't have
qsub installed on my machine, and the
qsub man page I found doesn't have the
-d directory option that you're using. But, there is clearly no way that adding options to
qsub is going to make any difference if
qsub can't be found in your
$PATH and you don't specify an absolute pathname to where you have installed
qsub on your system. All I can do is help you with the
bash shell syntax.
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QSUB(1) User Contributed Perl Documentation QSUB(1)
NAME
qsub - submit a batch job in a familiar pbs format
SYNOPSIS
qsub [-a date_time]
[-A account_string]
[-b secs]
[-C directive_prefix]
[-e path]
[-I]
[-l resource_list]
[-m mail_options] [-M user_list]
[-N name]
[-o path]
[-p priority]
[-q destination]
[-W additional_attributes]
[-h]
[script]
DESCRIPTION
The qsub command displays information about nodes. It is aimed to be feature-compatible with PBS' qsub.
OPTIONS
-a Display information for all nodes. This is the default if no node name is specified.
-I Interactive execution.
-j join
It is not necessary (currently also not possible) since stderr/stdout are always joined.
-v [variable_list]
Exporting single variables via -v is not supported, since the entire login environment is exported by the default.
-V The -V option to export the current environment is not required since it is done by default.
-? | --help
brief help message
--man
full documentation
perl v5.14.2 2012-04-10 QSUB(1)