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Full Discussion: Submitting multiple qsub jobs
Top Forums UNIX for Advanced & Expert Users Submitting multiple qsub jobs Post 302959333 by Don Cragun on Sunday 1st of November 2015 01:28:23 AM
Old 11-01-2015
Quote:
Originally Posted by syg3434
I have tried the code that you suggest, but it also has the same problem.
However, when I am trying to run a single simulation, "qsub" works well.

If I want to run the "runAll.sh" file, I use a command which is "qsub runAll.sh".
I think if I utilize appropriate options for qsub command, it can help to solve the issue.
But, it is hard to guess which option is appropriate for the simulation.

Could you suggest any qsub options for submitting this sh file?


Thanks a lot!
It appears that you completely ignored:
Quote:
After you set and exported PATH to include the directory in which you have installed qsub, ...
in my last response. I can't suggest anything on how to use qsub other than to try the code that you said is already working. I don't have qsub installed on my machine, and the qsub man page I found doesn't have the -d directory option that you're using. But, there is clearly no way that adding options to qsub is going to make any difference if qsub can't be found in your $PATH and you don't specify an absolute pathname to where you have installed qsub on your system. All I can do is help you with the bash shell syntax.
 

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LEARN ABOUT HPUX

qsub

QSUB(1) 						User Contributed Perl Documentation						   QSUB(1)

NAME

       qsub - submit a batch job in a familiar pbs format

SYNOPSIS

       qsub  [-a date_time]
	     [-A account_string]
	     [-b secs]
	     [-C directive_prefix]
	     [-e path]
	     [-I]
	     [-l resource_list]
	     [-m mail_options] [-M  user_list]
	     [-N name]
	     [-o path]
	     [-p priority]
	     [-q destination]
	     [-W additional_attributes]
	     [-h]
	     [script]

DESCRIPTION

       The qsub command displays information about nodes. It is aimed to be feature-compatible with PBS' qsub.

OPTIONS

       -a  Display information for all nodes. This is the default if no node name is specified.

       -I  Interactive execution.

       -j join
	   It is not necessary (currently also not possible) since stderr/stdout are always joined.

       -v [variable_list]
	   Exporting single variables via -v is not supported, since the entire login environment is exported by the default.

       -V  The -V option to export the current environment is not required since it is done by default.

       -? | --help
	   brief help message

       --man
	   full documentation

perl v5.14.2							    2012-04-10								   QSUB(1)
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