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Top Forums UNIX for Advanced & Expert Users Submitting multiple qsub jobs Post 302959333 by Don Cragun on Sunday 1st of November 2015 01:28:23 AM
Old 11-01-2015
Quote:
Originally Posted by syg3434
I have tried the code that you suggest, but it also has the same problem.
However, when I am trying to run a single simulation, "qsub" works well.

If I want to run the "runAll.sh" file, I use a command which is "qsub runAll.sh".
I think if I utilize appropriate options for qsub command, it can help to solve the issue.
But, it is hard to guess which option is appropriate for the simulation.

Could you suggest any qsub options for submitting this sh file?


Thanks a lot!
It appears that you completely ignored:
Quote:
After you set and exported PATH to include the directory in which you have installed qsub, ...
in my last response. I can't suggest anything on how to use qsub other than to try the code that you said is already working. I don't have qsub installed on my machine, and the qsub man page I found doesn't have the -d directory option that you're using. But, there is clearly no way that adding options to qsub is going to make any difference if qsub can't be found in your $PATH and you don't specify an absolute pathname to where you have installed qsub on your system. All I can do is help you with the bash shell syntax.
 

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qorder(1B)								PBS								qorder(1B)

NAME
qorder - exchange order of two pbs batch jobs in a queue. SYNOPSIS
qorder job_identifier job_identifier DESCRIPTION
To order two jobs is to exchange the jobs positions in the queue or queues in which the jobs resides. The two jobs must be located at the same server. No attribute of the job, such as priority is changed. The impact of interchanging the order with the queue(s) is dependent on local job scheduled policy, contact your systems administrator. A job in the running state cannot be reordered. OPERANDS
Both operands are job_identifiers which specify the jobs to be exchanged. The qorder command accepts two job_identifier operands of the form: sequence_number[.server_name][@server] The server specification for the two jobs must agree as to the current location of the two job IDs. STANDARD ERROR
The qorder command will write diagnostic messages to standard error for each error occurrence. EXIT STATUS
Upon successful processing of all the operands presented to the qorder command, the exit status will be a value of zero. If the qorder command fails to process any operand, the command exits with a value greater than zero. SEE ALSO
qsub(1B), qmove(1B), pbs_orderjob(3B), pbs_movejob(3B) Local qorder(1B)
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