I have no idea whether or not qsub is installed on your system or not. And, if it is installed, I have no idea what directory was specified when it was installed. But, in addition to that problem, bash (and any other shell that supports basic POSIX standard shell requirements) has a pre-initialized variable naming the current working directory, and you can't quote a filename pattern if you want the pattern to be expanded to a list of matching files. To protect yourself against whitespace characters in filenames and pathnames, you should also double-quote the variable expansions.
After you set and exported PATH to include the directory in which you have installed qsub, you might want to try something more like:
I have an ftp user, which has been setup to run ftp jobs to a specific machine (different jobs). for the first job i created .netrc in the ftp users home directory and added the appropriate commands
machine FTPBOX01 login user1 password xxx
macdef init
etc
etc
get file
bye
I use the... (3 Replies)
Is there any way I can submit a job to a remote machine and return immediately without withing for the job to finish?
What I mean is this...using rsh I can submit a job to a remote machine like this:
rsh remotemac1 job.sh
But this doesn't return untill the job has finished and as a... (3 Replies)
I have a list of jobs. their expected start time and their expected duration.
my needs are
monitor multiple jobs (starting at different time and their execution time also differs)
Need to mail if any of the job running longer than its expected duration.
Whats the efficient way to scripting... (1 Reply)
Hello,
I would like to write a perl script which executes several jobs. The key thing is I only want 4 jobs to be executed at one time (that's because my machine as 4 cpu, and I want one job per cpu). Is there any way that I can get perl to co-operate with me in this?
Thanks! (1 Reply)
Hello,
I have a perl script that takes in one file of input and outputs to a file. I would like to run this script on several input files, and I would like to run it with qsub, something like this:
Input files:
FileListDssp.txt.numaa
FileListDssp.txt.numab
FileListDssp.txt.numac
etc..
... (1 Reply)
I have a sequence of tasks that I routinely run and I'm trying to parallelize certain portions of the sequence. Specifically, there are 3 tasks which all read from the same file, each performing different operations and writing to their own seperate file. I was wondering if I could execute these... (3 Replies)
Hi,
I ran two crontab commands
using:
crontab program1
crontab program2
However when I type crontab -l only the second cron job shows up, how do I see all cron jobs running and how do I edit all at the same time
Thanks in Advance
S:D (10 Replies)
Hi
I am new to submitting jobs. I am trying to submit my perl file to the cluster.
This is what my shell file looks like (shell1.sh):
#!/bin/sh
#$ -S /bin/sh
cd data/projects/mydir/abbc
perl autocorro.pl
followed by qsub shell1.sh
It takes the qsub, but does nothing. I check... (1 Reply)
I have multiple jobs and each job dependent on other job.
Each Job generates a log and If job completed successfully log file end's with JOB ENDED SUCCESSFULLY message and if it failed then it will end with JOB ENDED with FAILURE.
I need an help how to start.
Attaching the JOB dependency... (3 Replies)
I have two scripts which I'm tying to run one after the other- this is what I've tried:
00 14 * * * /path/one.sh && /path/two.sh
I've also tried putting each script on a different line:
00 14 * * * /path/one.sh
00 14 * * * /path/two.sh
Can this be done? (1 Reply)
Discussion started by: $shell_Learner
1 Replies
LEARN ABOUT OSX
qsub
QSUB(1) User Contributed Perl Documentation QSUB(1)NAME
qsub - submit a batch job in a familiar pbs format
SYNOPSIS
qsub [-a date_time]
[-A account_string]
[-b secs]
[-C directive_prefix]
[-e path]
[-I]
[-l resource_list]
[-m mail_options] [-M user_list]
[-N name]
[-o path]
[-p priority]
[-q destination]
[-W additional_attributes]
[-h]
[script]
DESCRIPTION
The qsub command displays information about nodes. It is aimed to be feature-compatible with PBS' qsub.
OPTIONS -a Display information for all nodes. This is the default if no node name is specified.
-I Interactive execution.
-j join
It is not necessary (currently also not possible) since stderr/stdout are always joined.
-v [variable_list]
Exporting single variables via -v is not supported, since the entire login environment is exported by the default.
-V The -V option to export the current environment is not required since it is done by default.
-? | --help
brief help message
--man
full documentation
perl v5.14.2 2012-04-10 QSUB(1)