I have no idea whether or not qsub is installed on your system or not. And, if it is installed, I have no idea what directory was specified when it was installed. But, in addition to that problem, bash (and any other shell that supports basic POSIX standard shell requirements) has a pre-initialized variable naming the current working directory, and you can't quote a filename pattern if you want the pattern to be expanded to a list of matching files. To protect yourself against whitespace characters in filenames and pathnames, you should also double-quote the variable expansions.
After you set and exported PATH to include the directory in which you have installed qsub, you might want to try something more like:
Code:
#!/bin/bash
for i0 in run_*.sh
do qsub -d "$PWD" "$i0"
done
I have an ftp user, which has been setup to run ftp jobs to a specific machine (different jobs). for the first job i created .netrc in the ftp users home directory and added the appropriate commands
machine FTPBOX01 login user1 password xxx
macdef init
etc
etc
get file
bye
I use the... (3 Replies)
Is there any way I can submit a job to a remote machine and return immediately without withing for the job to finish?
What I mean is this...using rsh I can submit a job to a remote machine like this:
rsh remotemac1 job.sh
But this doesn't return untill the job has finished and as a... (3 Replies)
I have a list of jobs. their expected start time and their expected duration.
my needs are
monitor multiple jobs (starting at different time and their execution time also differs)
Need to mail if any of the job running longer than its expected duration.
Whats the efficient way to scripting... (1 Reply)
Hello,
I would like to write a perl script which executes several jobs. The key thing is I only want 4 jobs to be executed at one time (that's because my machine as 4 cpu, and I want one job per cpu). Is there any way that I can get perl to co-operate with me in this?
Thanks! (1 Reply)
Hello,
I have a perl script that takes in one file of input and outputs to a file. I would like to run this script on several input files, and I would like to run it with qsub, something like this:
Input files:
FileListDssp.txt.numaa
FileListDssp.txt.numab
FileListDssp.txt.numac
etc..
... (1 Reply)
I have a sequence of tasks that I routinely run and I'm trying to parallelize certain portions of the sequence. Specifically, there are 3 tasks which all read from the same file, each performing different operations and writing to their own seperate file. I was wondering if I could execute these... (3 Replies)
Hi,
I ran two crontab commands
using:
crontab program1
crontab program2
However when I type crontab -l only the second cron job shows up, how do I see all cron jobs running and how do I edit all at the same time
Thanks in Advance
S:D (10 Replies)
Hi
I am new to submitting jobs. I am trying to submit my perl file to the cluster.
This is what my shell file looks like (shell1.sh):
#!/bin/sh
#$ -S /bin/sh
cd data/projects/mydir/abbc
perl autocorro.pl
followed by qsub shell1.sh
It takes the qsub, but does nothing. I check... (1 Reply)
I have multiple jobs and each job dependent on other job.
Each Job generates a log and If job completed successfully log file end's with JOB ENDED SUCCESSFULLY message and if it failed then it will end with JOB ENDED with FAILURE.
I need an help how to start.
Attaching the JOB dependency... (3 Replies)
I have two scripts which I'm tying to run one after the other- this is what I've tried:
00 14 * * * /path/one.sh && /path/two.sh
I've also tried putting each script on a different line:
00 14 * * * /path/one.sh
00 14 * * * /path/two.sh
Can this be done? (1 Reply)
Discussion started by: $shell_Learner
1 Replies
LEARN ABOUT MOJAVE
pwd
PWD(1) BSD General Commands Manual PWD(1)NAME
pwd -- return working directory name
SYNOPSIS
pwd [-L | -P]
DESCRIPTION
The pwd utility writes the absolute pathname of the current working directory to the standard output.
Some shells may provide a builtin pwd command which is similar or identical to this utility. Consult the builtin(1) manual page.
The options are as follows:
-L Display the logical current working directory.
-P Display the physical current working directory (all symbolic links resolved).
If no options are specified, the -L option is assumed.
ENVIRONMENT
Environment variables used by pwd:
PWD Logical current working directory.
EXIT STATUS
The pwd utility exits 0 on success, and >0 if an error occurs.
SEE ALSO builtin(1), cd(1), csh(1), sh(1), getcwd(3)STANDARDS
The pwd utility conforms to IEEE Std 1003.1-2001 (``POSIX.1'').
BUGS
In csh(1) the command dirs is always faster because it is built into that shell. However, it can give a different answer in the rare case
that the current directory or a containing directory was moved after the shell descended into it.
The -L option does not work unless the PWD environment variable is exported by the shell.
BSD April 12, 2003 BSD