10-08-2015
Here is what I did:
- Created a file dna.sed
- Created another bash script file with your code (starting with the usual #!)
- Called the shell script "conversion.sh" and chmod it to excutable
- ran it like this: ./conversion.sh < dna_input.dna
- Got my result as expected for the test input file.
Thank you for your help.
How would one put this into a single script file?
9 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi all,
I have a requirement where the variable name starts with $, like
$Amd=/home/student/test/
How to work wit it? can some one help me, am in gr8 confusion:confused: (5 Replies)
Discussion started by: shreekrishnagd
5 Replies
2. Shell Programming and Scripting
My input is listed as:
giNumber RefAminoAcid VarAminoAcid
10190711 P P
10190711 D D
109255248 I A
110349771 A ... (4 Replies)
Discussion started by: patrick chia
4 Replies
3. Shell Programming and Scripting
Hi all,
Using Perl, I need to extract DNA bases from a GenBank file for a given plant species. A sample GenBank file is here...
Nucleotide
This is saved on my computer as NC_001666.gb. I also have a file that is saved on my computer as NC_001666.txt. This text file has a list of all... (5 Replies)
Discussion started by: akreibich07
5 Replies
4. Shell Programming and Scripting
I am trying to reverse and complement my DNA sequences. The file format is FASTA, something like this:
Now, to reverse the sequence, I should start reading from right to left. At the same should be complemented. Thus, "A" should be read as "T"; "C" should be read as "G"; "T" should be converted... (8 Replies)
Discussion started by: Xterra
8 Replies
5. Shell Programming and Scripting
Hi all,
I have a file like this
ID 3BP5L_HUMAN Reviewed; 393 AA.
AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3;
DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 05-SEP-2012, entry version 71.
FT COILED 59 140 ... (1 Reply)
Discussion started by: manigrover
1 Replies
6. Shell Programming and Scripting
Looking for a simple way to convert ranges to a numerical sequence that would assign the original value of the range to the individual numbers that are on the range.
Thank you
given data
13196-13199 0
13200 4
13201 10
13202-13207 3
13208-13210 7
desired... (3 Replies)
Discussion started by: jcue25
3 Replies
7. Shell Programming and Scripting
Thanks Guys
This really helped (5 Replies)
Discussion started by: robert89
5 Replies
8. Shell Programming and Scripting
Hi,
I am having a file of dna sequences in fasta format which look like this:
>admin_1_45
atatagcaga
>admin_1_46
atatagcagaatatatat
with many such thousands of sequences in a single file. I want to the replace the accession Id "admin_1_45" similarly in following sequences to... (5 Replies)
Discussion started by: margarita
5 Replies
9. Red Hat
If I run rm -rf * command under one parent directory.
/data > rm -rf *
Is there anyway to know which files will be deleted first ?
Start using code tags please, ty. (2 Replies)
Discussion started by: sameermohite
2 Replies
LEARN ABOUT DEBIAN
exim_convert4r4
EXIM_CONVERT4R4(8) System Manager's Manual EXIM_CONVERT4R4(8)
NAME
exim_convert4r4 - Convert Exim configuration from v3 to v4 format
SYNOPSIS
exim_convert4r4
DESCRIPTION
This script is provided to assist in updating Exim configuration files. It reads an Exim 3 configuration file on the standard input, and
writes a modified file on the standard output. It also writes comments about what it has done to the standard error file. It assumes that
the input is a valid Exim 3 configuration file. A typical call to the conversion script might be
exim_convert4r4 < /etc/exim/exim.conf > /etc/exim4/exim4.conf.new
The output file MUST be checked and tested before trying to use it on a live system. The conversion script is just an aid which does a lot
of the "grunt work". It does not guarantee to produce an Exim 4 configuration that behaves exactly the same as the Exim 3 configuration it
reads.
Each option change in the new file is preceded by an identifying comment. In fact, the conversion script tends to make quite a mess of
your configuration, and you should expect to go through it afterwards and tidy it up by hand.
Unless you are running a very straightforward configuration, the automatic conversion is likely to generate a non-optimal configuration.
You should not only check it thoroughly, but also run as many tests as you can, to ensure that it is working as you expect. In particular,
you should test address routing, using -bt and -bv, and the policy controls, using -bh. If possible, you should also do some live tests
(i.e. send and receive some messages) before putting Exim 4 into service.
If you have a very complicated configuration, it is possible that exim_convert4r4 will break it in some situations, which is why thorough
testing is strongly recommended.
BUGS
This manual page needs a major re-work. If somebody knows better groff than us and has more experience in writing manual pages, any patches
would be greatly appreciated.
SEE ALSO
exim(8), the files in /usr/share/doc/exim4-base/, especially Exim4.upgrade.gz
AUTHOR
This manual page was stitched together from Exim4.upgrade by Andreas Metzler <ametzler at downhill.at.eu.org>, for the Debian GNU/Linux
system (but may be used by others).
March 26, 2003 EXIM_CONVERT4R4(8)