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Top Forums Shell Programming and Scripting awk to print unique text in field Post 302957286 by drl on Thursday 8th of October 2015 04:20:30 PM
Old 10-08-2015
Hi, Scrutinizer.
Quote:
Originally Posted by Scrutinizer
@drl, that works if there is always only one kind of label per line...
Yes, I see what you mean, thanks; however, more kinds of labels were not presented in the sample data. If I have time, I'll think about a solution for that ... cheers, drl

---------- Post updated at 15:20 ---------- Previous update was at 15:10 ----------

Hi.

To correct possible flaw noted by Scrutinizer:
Code:
#!/usr/bin/env bash

# @(#) s2	Demonstrate extract unique string from specific field.

# Utility functions: print-as-echo, print-line-with-visual-space, debug.
# export PATH="/usr/local/bin:/usr/bin:/bin"
LC_ALL=C ; LANG=C ; export LC_ALL LANG
pe() { for _i;do printf "%s" "$_i";done; printf "\n"; }
pl() { pe;pe "-----" ;pe "$*"; }
db() { ( printf " db, ";for _i;do printf "%s" "$_i";done;printf "\n" ) >&2 ; }
db() { : ; }
C=$HOME/bin/context && [ -f $C ] && $C cut tr sort

FILE=${1-data2}

pl " Input data file $FILE:"
cat $FILE

pl " Results:"
cut -f2 -d" " $FILE |
tee f1 |
tr ';' '\n' |
tee f2 |
cut -f1 -d":" |
tee f3 |
sort -u

exit 0

produciing:
Code:
$ ./s2

Environment: LC_ALL = C, LANG = C
(Versions displayed with local utility "version")
OS, ker|rel, machine: Linux, 2.6.26-2-amd64, x86_64
Distribution        : Debian 5.0.8 (lenny, workstation) 
bash GNU bash 3.2.39
cut (GNU coreutils) 6.10
tr (GNU coreutils) 6.10
sort (GNU coreutils) 6.10

-----
 Input data file data2:
chr17:29667512-29667673 NF1:exon.1;NF1:exon.2;NF1:exon.38;NF1:exon.4;NF1:exon.46;NF1:exon.47 703.807
chr16:89877104-89877220 FANCA:exon.4;FANCA:exon.5 159.284
chr16:89838075-89838232 FANCA:exon.23;FANCA:exon.4 583.497
chr18:89838075-89838232 DARK:exon.23;FANCA:exon.4 583.497
chr19:89838075-89838232 PARK:exon.23;DARK:exon.4 583.497

-----
 Results:
DARK
FANCA
NF1
PARK

Best wishes ... cheers, drl
This User Gave Thanks to drl For This Post:
 

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GREP(1) 						      General Commands Manual							   GREP(1)

NAME
grep - search a file for a pattern SYNOPSIS
grep [ option ... ] pattern [ file ... ] DESCRIPTION
Grep searches the input files (standard input default) for lines (with newlines excluded) that match the pattern, a regular expression as defined in regexp(6). Normally, each line matching the pattern is `selected', and each selected line is copied to the standard output. The options are -c Print only a count of matching lines. -h Do not print file name tags (headers) with output lines. -i Ignore alphabetic case distinctions. The implementation folds into lower case all letters in the pattern and input before interpre- tation. Matched lines are printed in their original form. -l (ell) Print the names of files with selected lines; don't print the lines. -L Print the names of files with no selected lines; the converse of -l. -n Mark each printed line with its line number counted in its file. -s Produce no output, but return status. -v Reverse: print lines that do not match the pattern. Output lines are tagged by file name when there is more than one input file. (To force this tagging, include /dev/null as a file name argument.) Care should be taken when using the shell metacharacters $*[^|()= and newline in pattern; it is safest to enclose the entire expression in single quotes '...'. SOURCE
/sys/src/cmd/grep.c SEE ALSO
ed(1), awk(1), sed(1), sam(1), regexp(6) DIAGNOSTICS
Exit status is null if any lines are selected, or non-null when no lines are selected or an error occurs. GREP(1)
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