The Marker line does exist and the name does exist but it not always mmm or jjj. They vary each time. I just need them to be replaced with the names on the file.
Hope that makes sense.
Quote:
Originally Posted by Aia
I created the code based on your first post example:
I suspect there are discrepancies between what you posted and what you actually have. Let me ask you. Does mmm.fsa jjj.fsa, actually exist in the real file? Is this "Marker" line, in red, the second line of the file?
How do I use the grep command to take mutiple text files in a folder and make one huge text file out of them. I'm using Mac OS X and can not find a text tool that does it so I figured I'd resort to the BSD Unix CLI for a solution... there are 5,300 files that I want to write to one huge file so... (7 Replies)
Hi All,
I've written a shell script in which i defined two varibles
for example:
str=1.0.0.15
timeStamp=2008.03.08
now using this varibles i need to modify a text file.
The text content looks like this
************************
* packageNumber : 1.0.0.14 *
* date :... (2 Replies)
Hi all,
*I use Uwin and Cygwin emulator.
I´m trying to search for all text files in the current folder (C/Files) and its sub folders using
find -depth -name "*.txt"
The above command worked for me, but now I would like to copy all found text files to a new folder (C/Files/Text) with ... (4 Replies)
Hi, been searching Google for like an hour and I doubt I got the right keywords so might as well ask here.
What I need:
Before:
Article1.txt 564
Article2.txt 799
Article3.txt 349
Article4.txt 452
* Separate files over 400 wordcount *
After:
Article1.txt 564... (3 Replies)
I have a text file which contains lines in this format - it contains 105 lines in total, but I'm just putting 4 here to keep it short:
58571,east_ppl_ppla_por
58788,east_pcy_hd_por
58704,east_pcy_ga_por
58697,east_pcy_pcybs_por
It's called id_key.txt
I have a sample folder called... (9 Replies)
Have to read one file say sourcefile containing several words and having another folder containing several files.
Now read the first word of Sourcefile & search it into the folder consisting sevral files, and create another file with result. We hhave to pick the filename of the file in which... (3 Replies)
Hi Experts,
I have a text exactly like below in a file:
id item_id
item_date prin_mkt_val
--------------------------- ---------------------------
------------------------------- ------------------------
... (1 Reply)
Hello,
I have a file ff.txt that looks as follows
*ABNA.txt
356
24
36
112
*AC24.txt
457
458
321
2
ABNA.txt and AC24.txt are the files in the folder named foo1. Based on the numbers in the ff.txt file, I want to extract the lines from the corresponding files in the foo1 folder and... (2 Replies)
how to add a text ( surya) at the beginning of a text files (so many) in folder
text file:
111111
555555
666666
result:
surya
111111
555555
666666 (3 Replies)
greetings,
I have what seems to be a fairly complex task at hand. I am dealing with 3 outputs from a database.
a) Listing of tables. The first 3 characters are always an identifier of an application. See in part b -
Example-
select tablename from system.tables
ABC1
ABC2
RFV1
... (2 Replies)
Discussion started by: jeffs42885
2 Replies
LEARN ABOUT DEBIAN
bio::map::markeri
Bio::Map::MarkerI(3pm) User Contributed Perl Documentation Bio::Map::MarkerI(3pm)NAME
Bio::Map::MarkerI - Interface for basic marker functionality
SYNOPSIS
# do not use this module directly
# See Bio::Map::Marker for an example of
# implementation.
DESCRIPTION
A Marker is a Bio::Map::Mappable with some properties particular to markers. It also offers a number of convienience methods to make
dealing with map elements easier.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Jason Stajich
Email jason@bioperl.org
CONTRIBUTORS
Heikki Lehvaslaiho heikki-at-bioperl-dot-org Lincoln Stein lstein@cshl.org Jason Stajich jason@bioperl.org Chad Matsalla
bioinformatics1@dieselwurks.com Sendu Bala bix@sendu.me.uk
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
get_position_object
Title : get_position_class
Usage : my $position = $marker->get_position_object();
Function: To get an object of the default Position class
for this Marker. Subclasses should redefine this method.
The Position returned needs to be a L<Bio::Map::PositionI> with
-element set to self.
Returns : L<Bio::Map::PositionI>
Args : none for an 'empty' PositionI object, optionally
Bio::Map::MapI and value string to set the Position's -map and -value
attributes.
position
Title : position
Usage : my $position = $mappable->position();
$mappable->position($position);
Function: Get/Set the Position of this Marker (where it is on which map),
purging all other positions before setting.
Returns : L<Bio::Map::PositionI>
Args : Bio::Map::PositionI
OR
Bio::Map::MapI AND
scalar
OR
scalar, but only if the marker has a default map
positions
Title : positions
Usage : $marker->positions([$pos1, $pos2, $pos3]);
Function: Add multiple Bio::Map::PositionI to this marker
Returns : n/a
Args : array ref of $map/value tuples or array ref of Bio::Map::PositionI
default_map
Title : default_map
Usage : my $map = $marker->default_map();
Function: Get/Set the default map for the marker.
Returns : L<Bio::Map::MapI>
Args : [optional] new L<Bio::Map::MapI>
in_map
Title : in_map
Usage : if ( $marker->in_map($map) ) {}
Function: Tests if this marker is found on a specific map
Returns : boolean
Args : a map unique id OR Bio::Map::MapI
perl v5.14.2 2012-03-02 Bio::Map::MarkerI(3pm)