Python passing filename through argument Post: 302951770

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Top Forums Programming Python passing filename through argument Post 302951770 by yifangt on Monday 10th of August 2015 01:53:24 PM

08-10-2015

Registered User

Python passing filename through argument

Hello,
A python beginner question on passing filename thru argument. My code is:

Code:

#!/usr/bin/python

import sys, getopt
import os

def main(argv):
    try:
        opts, args = getopt.getopt(sys.argv[1:],"hi:o:ce", ["help", "inputfile", "outputdir", "containment", "error_tolerance"])
    except getopt.GetoptError:
        usage()
        print("Usage: %s -i inputfile -o outputdirectory -c containment -e error_tolerance" % sys.argv[0])
        sys.exit(2)

    for opt, arg in opts:
        if opt == '-h':
           print 'this_script.py -i <inputfile> -o <outputdir> -c <containment> -e <error_tolerance>'
           sys.exit()
        elif opt in ("-i", "--infile"):
           inputfile = arg    #Is this the right way to pass filename thru argument?
        elif opt in ("-o", "--outdir"):
           outputdir = arg
        elif opt == '-c':
           containment = arg
        elif opt == '-e':
           error_pct = arg

if __name__ == '__main__':
    main(sys.argv[1])


def get_overlap_data(m4_filename):
    containment_tolerance = containment
    permitted_error_pct = error_pct
    overlap_data = {}
    contained_reads = set()
    with open(m4_filename) as m4_f:
        for l in m4_f:
            # ......omitted
    return overlap_data, contained_reads

overlap_data, contained_reads = get_overlap_data(inputfile)   #This line always gave error
......

but I always got error as:

Code:

Traceback (most recent call last):
  File "learnpython01.py", line 123, in <module>
    overlap_data, contained_reads = get_overlap_data(inputfile)
NameError: name 'inputfile' is not defined

I was wondering what the right way it is to pass filename thru argument in python. Related lines are highlighted in red.
Thanks a lot!

yifangt

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grub-render-label

GRUB-RENDER-LABEL(1)                                               User Commands                                              GRUB-RENDER-LABEL(1)

NAME

       grub-render-label - generate a .disk_label for Apple Macs.

SYNOPSIS

       grub-render-label [OPTION...] [OPTIONS]

DESCRIPTION

       Render Apple .disk_label.

       -b, --bgcolor=COLOR
              use COLOR for background

       -c, --color=COLOR
              use COLOR for text

       -f, --font=FILE
              use FILE as font (PF2).

       -i, --input=FILE
              read text from FILE.

       -o, --output=FILE
              set output filename. Default is STDOUT

       -t, --text=STRING
              set the label to render

       -v, --verbose
              print verbose messages.

       -?, --help
              give this help list

       --usage
              give a short usage message

       -V, --version
              print program version

       Mandatory or optional arguments to long options are also mandatory or optional for any corresponding short options.

REPORTING BUGS

       Report bugs to <bug-grub@gnu.org>.

SEE ALSO

       The  full  documentation  for grub-render-label is maintained as a Texinfo manual.  If the info and grub-render-label programs are properly
       installed at your site, the command

              info grub-render-label

       should give you access to the complete manual.

grub-render-label (GRUB) 2.02-2ubuntu8.3                             July 2018                                                GRUB-RENDER-LABEL(1)

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