sir that is excel file how can i post here?
however it is roughly like
Code:
sequence id extracted region small extracted region big upstream and downstream
gi|546669925|gb|AWWX01450616.1| CACCTTGATCTTGGACTTCTAGC "CCAGAGAAAAAAGAAGAGAAAAAAAATCACTTGGGGACATAGCAAGAAGGTGGCCATCCTCAAACCAAGG
AGAGAAGCCAGAAGAAACCAAACTTTCCAACACCTTGATCTTGGACTTCTAGCCTCCAGAACTGTGAGAA
AATAAATTTCTGTAGAGTCACCCAGTCTGTGGTATTTTGTTATGGCAGACCTAGCAGACTGATATGCTCC
TTAAGGCAAGA"
---------- Post updated at 03:30 AM ---------- Previous update was at 03:01 AM ----------
cragun sir, last entry yes i want to generate 5 set of output correspond to each gi|546669842|gb|AWWX01450698.1| entry. though it is occurring multiple times but positions are different so there should be 5 lines of result in the result file correspond to gi|546669842|gb|AWWX01450698.1| entry.
and last entry is there in file1 see entry no 4.
---------- Post updated at 04:27 AM ---------- Previous update was at 03:30 AM ----------
even now any problem exists sir?
---------- Post updated 08-07-15 at 12:23 AM ---------- Previous update was 08-06-15 at 04:27 AM ----------
Hi,
I'm working hard on SQL and I came across a hurdle I'm hoping you can help me out with.
I have two tables
table1
headers: chrom start end name score strand
11 9720685 9720721 U0 0 +
21 9721043 9721079 U0 0 -
1 9721093 9721129 U0 0 +
20 ... (2 Replies)
Hi all,
I have difficulty to solve the followign problem.
mydata:
StartPoint EndPoint
22 55
2222 2230
33 66
44 58
222 240
11 25
22 60
33 45
The union of above... (2 Replies)
Hi everyone,
I have a large text file containing DNA sequences in fasta format as follows:
>someseq
GAACTTGAGATCCGGGGAGCAGTGGATCTC
CACCAGCGGCCAGAACTGGTGCACCTCCAG
GCCAGCCTCGTCCTGCGTGTC
>another seq
GGCATTTTTGTGTAATTTTTGGCTGGATGAGGT
GACATTTTCATTACTACCATTTTGGAGTACA
>seq3450... (4 Replies)
Hi, I have a file1 of many long sequences, each preceded by a unique header line. file2 is 3-columns list: headers name, start position, end position. I'd like to extract the sequence region of file1 specified in file2.
Based on a post elsewhere, I found the code:
awk... (2 Replies)
Hi all,
I have a file like this
ID 3BP5L_HUMAN Reviewed; 393 AA.
AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3;
DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 05-SEP-2012, entry version 71.
FT COILED 59 140 ... (1 Reply)
FILE_ID extraction from file name and save it in CSV file after looping through each folders
My files are located in UNIX Server, i want to extract file_id and file_name from each file .and save it in a CSV file. How do I do that?
I have folders in unix environment, directory structure is... (15 Replies)
Hi I have 2 files; usually the end position in the file1 is the start position in the file2 and the end position in file2 will be the start position in file1 (flanks)
file1
Id start end
aaa1 0 3000070
aaa1 3095270 3095341
aaa1 3100822 3100894
aaa1 ... (1 Reply)
Old skool UNIX and Linux geek here, but newbie to the world of DNS and bind. I've recently been tasked with replacing our DNS infrastructure, currently on Windows, with a RHEL based solution. And I assume that means using bind, which I've not used before. Here's my question:
Suppose our company... (3 Replies)
HI,
I have a Complete genome fasta file and I have list of sub sequence regions
in the format as :
4353..5633
6795..9354
1034..14456
I want a script which can mask these region in a single complete genome fasta file with the alphabet N
kindly help (2 Replies)
i want to extract specific region of interest from big file. i have only start position, end position and seq id, see my query is:
I have file1 is this
>GL3482.1
GAACTTGAGATCCGGGGA
GCAGTGGATCTCCACCAG
CGGCCAGAACTGGTGCAC
CTCCAGGCCAGCCTCGTC
CTGCGTGTC
>GL3550.1... (14 Replies)
Discussion started by: harpreetmanku04
14 Replies
LEARN ABOUT OPENDARWIN
set_color
set_color(1) fish set_color(1)NAME
set_color - set_color - set the terminal color
set_color - set the terminal color
Synopsis
set_color [-v --version] [-h --help] [-b --background COLOR] [COLOR]
Description
Change the foreground and/or background color of the terminal. COLOR is one of black, red, green, brown, yellow, blue, magenta, purple,
cyan, white and normal.
o -b, --background Set the background color
o -c, --print-colors Prints a list of all valid color names
o -h, --help Display help message and exit
o -o, --bold Set bold or extra bright mode
o -u, --underline Set underlined mode
o -v, --version Display version and exit
Calling set_color normal will set the terminal color to whatever is the default color of the terminal.
Some terminals use the --bold escape sequence to switch to a brighter color set. On such terminals, set_color white will result in a grey
font color, while set_color --bold white will result in a white font color.
Not all terminal emulators support all these features. This is not a bug in set_color but a missing feature in the terminal emulator.
set_color uses the terminfo database to look up how to change terminal colors on whatever terminal is in use. Some systems have old and
incomplete terminfo databases, and may lack color information for terminals that support it. Download and install the latest version of
ncurses and recompile fish against it in order to fix this issue.
Version 1.23.1 Sun Jan 8 2012 set_color(1)
08-07-2015
