Hi,
I'm working hard on SQL and I came across a hurdle I'm hoping you can help me out with.
I have two tables
table1
headers: chrom start end name score strand
11 9720685 9720721 U0 0 +
21 9721043 9721079 U0 0 -
1 9721093 9721129 U0 0 +
20 ... (2 Replies)
Hi all,
I have difficulty to solve the followign problem.
mydata:
StartPoint EndPoint
22 55
2222 2230
33 66
44 58
222 240
11 25
22 60
33 45
The union of above... (2 Replies)
Hi everyone,
I have a large text file containing DNA sequences in fasta format as follows:
>someseq
GAACTTGAGATCCGGGGAGCAGTGGATCTC
CACCAGCGGCCAGAACTGGTGCACCTCCAG
GCCAGCCTCGTCCTGCGTGTC
>another seq
GGCATTTTTGTGTAATTTTTGGCTGGATGAGGT
GACATTTTCATTACTACCATTTTGGAGTACA
>seq3450... (4 Replies)
Hi, I have a file1 of many long sequences, each preceded by a unique header line. file2 is 3-columns list: headers name, start position, end position. I'd like to extract the sequence region of file1 specified in file2.
Based on a post elsewhere, I found the code:
awk... (2 Replies)
Hi all,
I have a file like this
ID 3BP5L_HUMAN Reviewed; 393 AA.
AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3;
DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 05-SEP-2012, entry version 71.
FT COILED 59 140 ... (1 Reply)
FILE_ID extraction from file name and save it in CSV file after looping through each folders
My files are located in UNIX Server, i want to extract file_id and file_name from each file .and save it in a CSV file. How do I do that?
I have folders in unix environment, directory structure is... (15 Replies)
Hi I have 2 files; usually the end position in the file1 is the start position in the file2 and the end position in file2 will be the start position in file1 (flanks)
file1
Id start end
aaa1 0 3000070
aaa1 3095270 3095341
aaa1 3100822 3100894
aaa1 ... (1 Reply)
Old skool UNIX and Linux geek here, but newbie to the world of DNS and bind. I've recently been tasked with replacing our DNS infrastructure, currently on Windows, with a RHEL based solution. And I assume that means using bind, which I've not used before. Here's my question:
Suppose our company... (3 Replies)
HI,
I have a Complete genome fasta file and I have list of sub sequence regions
in the format as :
4353..5633
6795..9354
1034..14456
I want a script which can mask these region in a single complete genome fasta file with the alphabet N
kindly help (2 Replies)
i want to extract specific region of interest from big file. i have only start position, end position and seq id, see my query is:
I have file1 is this
>GL3482.1
GAACTTGAGATCCGGGGA
GCAGTGGATCTCCACCAG
CGGCCAGAACTGGTGCAC
CTCCAGGCCAGCCTCGTC
CTGCGTGTC
>GL3550.1... (14 Replies)
Discussion started by: harpreetmanku04
14 Replies
LEARN ABOUT OSX
locale::codes::langext
Locale::Codes::LangExt(3pm) Perl Programmers Reference Guide Locale::Codes::LangExt(3pm)NAME
Locale::Codes::LangExt - standard codes for language extension identification
SYNOPSIS
use Locale::Codes::LangExt;
$lext = code2langext('acm'); # $lext gets 'Mesopotamian Arabic'
$code = langext2code('Mesopotamian Arabic'); # $code gets 'acm'
@codes = all_langext_codes();
@names = all_langext_names();
DESCRIPTION
The "Locale::Codes::LangExt" module provides access to standard codes used for identifying language extensions, such as those as defined in
the IANA language registry.
Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default IANA language
registry codes will be used.
SUPPORTED CODE SETS
There are several different code sets you can use for identifying language extensions. A code set may be specified using either a name, or
a constant that is automatically exported by this module.
For example, the two are equivalent:
$lext = code2langext('acm','alpha');
$lext = code2langext('acm',LOCALE_LANGEXT_ALPHA);
The codesets currently supported are:
alpha
This is the set of three-letter (lowercase) codes from the IANA language registry, such as 'acm' for Mesopotamian Arabic.
This is the default code set.
ROUTINES
code2langext ( CODE [,CODESET] )
langext2code ( NAME [,CODESET] )
langext_code2code ( CODE ,CODESET ,CODESET2 )
all_langext_codes ( [CODESET] )
all_langext_names ( [CODESET] )
Locale::Codes::LangExt::rename_langext ( CODE ,NEW_NAME [,CODESET] )
Locale::Codes::LangExt::add_langext ( CODE ,NAME [,CODESET] )
Locale::Codes::LangExt::delete_langext ( CODE [,CODESET] )
Locale::Codes::LangExt::add_langext_alias ( NAME ,NEW_NAME )
Locale::Codes::LangExt::delete_langext_alias ( NAME )
Locale::Codes::LangExt::rename_langext_code ( CODE ,NEW_CODE [,CODESET] )
Locale::Codes::LangExt::add_langext_code_alias ( CODE ,NEW_CODE [,CODESET] )
Locale::Codes::LangExt::delete_langext_code_alias ( CODE [,CODESET] )
These routines are all documented in the Locale::Codes::API man page.
SEE ALSO
Locale::Codes
The Locale-Codes distribution.
Locale::Codes::API
The list of functions supported by this module.
http://www.iana.org/assignments/language-subtag-registry
The IANA language subtag registry.
AUTHOR
See Locale::Codes for full author history.
Currently maintained by Sullivan Beck (sbeck@cpan.org).
COPYRIGHT
Copyright (c) 2011-2012 Sullivan Beck
This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
perl v5.16.2 2012-10-11 Locale::Codes::LangExt(3pm)