Sponsored Content
Top Forums Shell Programming and Scripting Join files on multiple fields Post 302950740 by sheetalk on Tuesday 28th of July 2015 10:37:38 AM
Old 07-28-2015
Join files on multiple fields

Hello all,

I want to join 2 tabbed files on the first 2 fields, and filling the missing values with 0. The 3rd column in each file is constant for the entire file.


file1
Code:
12658699	ST5	XX2720	0	1	0	1					
53039541	ST5	XX2720	1	0	1.5	1

file2
Code:
53039541	ST5	X23	0	1	0	1					
1267456	ST1	X23	1	0	1.4	1


Desired output
Code:
12658699	ST5	XX2720	0	1	0	1	X23	0	0	0	0
53039541	ST5	XX2720	1	0	1.5	1	X23	0	1	0	1
1267456	ST1	XX2720	0	0	0	0	X23	1	0	1.4	1

Its throwing me an error when I do the following, after sorting..

Code:
join  -a1 -a2  -t$'\t'   -1 1,2 -2 1,2 file1 file2
join: invalid field number: `1,2'

Please help !
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

join on multiple fields

Is it possible to do a join on multiple fields of two files? I am trying to do something like join -t, -1 2,3 -2 2,3 -o 2.1,2.2,2.3,1.3 filea fileb I want the join to be on columns 2 and 3 of filea and columns 2 and 3 of fileb. What is hapenning is that the second file that I want to do the join... (1 Reply)
Discussion started by: reggiej
1 Replies

2. Shell Programming and Scripting

join on a file with multiple lines, fields

I've looked at the join command which is able to perform what I need on two rows with a common field, however if I have more than two rows I need to join all of them. Thus I have one file with multiple rows to be joined on an index number: 1 randomtext1 2 rtext2 2 rtext3 3 rtext4 3 rtext5... (5 Replies)
Discussion started by: crimper
5 Replies

3. UNIX for Dummies Questions & Answers

Join 2 files with multiple columns: awk/grep/join?

Hello, My apologies if this has been posted elsewhere, I have had a look at several threads but I am still confused how to use these functions. I have two files, each with 5 columns: File A: (tab-delimited) PDB CHAIN Start End Fragment 1avq A 171 176 awyfan 1avq A 172 177 wyfany 1c7k A 2 7... (3 Replies)
Discussion started by: InfoSeeker
3 Replies

4. Shell Programming and Scripting

How to join multiple files?

I am trying to join a few hundred files using join. Is there a way to use while read or something else to automate this. My problem is the following. Day 1 City Temp ABC 20 DEF 30 HIJ 15 Day 2 City Temp ABC 22 DEF 29 KLM 5 Day 3 (3 Replies)
Discussion started by: theFinn
3 Replies

5. UNIX for Dummies Questions & Answers

Need help with Join on multiple fields

Hi, I need help with the join command I have 2 files that I want to join on multiple fields. I want to return all records from file 1 I also want empty fields in my joined file if there isn't a match in file 2 I have already sorted them so I know they are in the same order. file1 ... (0 Replies)
Discussion started by: shunter0810
0 Replies

6. UNIX for Dummies Questions & Answers

How to use the the join command to join multiple files by a common column

Hi, I have 20 tab delimited text files that have a common column (column 1). The files are named GSM1.txt through GSM20.txt. Each file has 3 columns (2 other columns in addition to the first common column). I want to write a script to join the files by the first common column so that in the... (5 Replies)
Discussion started by: evelibertine
5 Replies

7. Shell Programming and Scripting

awk program to join 2 fields of different files

Hello Friends, I just need a small help, I need an awk program which can join 2 fields of different files which are having one common field into one file. File - 1 FileName~Size File- 2 FileName~Date I need the output file in the following way O/P- File FileName~Date~Size For... (4 Replies)
Discussion started by: abhisheksunkari
4 Replies

8. Shell Programming and Scripting

Join fields from files with duplicate lines

I have two files, file1.txt: 1 abc 2 def 2 dgh 3 ijk 4 lmn file2.txt 1 opq 2 rst 3 uvw My desired output is: 1 abc opq 2 def rst 2 dgh rst 3 ijk uvw (2 Replies)
Discussion started by: xan.amini
2 Replies

9. Shell Programming and Scripting

Join fields comparing 4 fields using awk

Hi All, I am looking for an awk script to do the following Join the fields together only if the first 4 fields are same. Can it be done with join function in awk?? a,b,c,d,8,,, a,b,c,d,,7,, a,b,c,d,,,9, a,b,p,e,8,,, a.b,p,e,,9,, a,b,p,z,,,,9 a,b,p,z,,8,, desired output: ... (1 Reply)
Discussion started by: aksijain
1 Replies

10. Shell Programming and Scripting

Join multiple files

Hi there, I am trying to join 24 files (i showed example of 3 files below). They all have 2 columns. The first columns is common to all. The files are tab delimited eg file 1 rs0001 100e-34 rs0003 2.8e-01 rs008 1.9e-90 file 2 rs0001 1.98e-22 rs0004 3.77e-10... (4 Replies)
Discussion started by: fat
4 Replies
Locale::Codes::LangExt(3)				User Contributed Perl Documentation				 Locale::Codes::LangExt(3)

NAME
Locale::Codes::LangExt - standard codes for language extension identification SYNOPSIS
use Locale::Codes::LangExt; $lext = code2langext('acm'); # $lext gets 'Mesopotamian Arabic' $code = langext2code('Mesopotamian Arabic'); # $code gets 'acm' @codes = all_langext_codes(); @names = all_langext_names(); DESCRIPTION
The "Locale::Codes::LangExt" module provides access to standard codes used for identifying language extensions, such as those as defined in the IANA language registry. Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default IANA language registry codes will be used. SUPPORTED CODE SETS
There are several different code sets you can use for identifying language extensions. A code set may be specified using either a name, or a constant that is automatically exported by this module. For example, the two are equivalent: $lext = code2langext('acm','alpha'); $lext = code2langext('acm',LOCALE_LANGEXT_ALPHA); The codesets currently supported are: alpha This is the set of three-letter (lowercase) codes from the IANA language registry, such as 'acm' for Mesopotamian Arabic. This is the default code set. ROUTINES
code2langext ( CODE [,CODESET] ) langext2code ( NAME [,CODESET] ) langext_code2code ( CODE ,CODESET ,CODESET2 ) all_langext_codes ( [CODESET] ) all_langext_names ( [CODESET] ) Locale::Codes::LangExt::rename_langext ( CODE ,NEW_NAME [,CODESET] ) Locale::Codes::LangExt::add_langext ( CODE ,NAME [,CODESET] ) Locale::Codes::LangExt::delete_langext ( CODE [,CODESET] ) Locale::Codes::LangExt::add_langext_alias ( NAME ,NEW_NAME ) Locale::Codes::LangExt::delete_langext_alias ( NAME ) Locale::Codes::LangExt::rename_langext_code ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangExt::add_langext_code_alias ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangExt::delete_langext_code_alias ( CODE [,CODESET] ) These routines are all documented in the Locale::Codes::API man page. SEE ALSO
Locale::Codes The Locale-Codes distribution. Locale::Codes::API The list of functions supported by this module. http://www.iana.org/assignments/language-subtag-registry The IANA language subtag registry. AUTHOR
See Locale::Codes for full author history. Currently maintained by Sullivan Beck (sbeck@cpan.org). COPYRIGHT
Copyright (c) 2011-2013 Sullivan Beck This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.16.3 2013-02-27 Locale::Codes::LangExt(3)
All times are GMT -4. The time now is 04:55 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy