The obvious guess would be that one or both of your input files is in DOS format (with <carriage-return><line-feed> line terminators) instead of UNIX format (with <newline> line terminators). To confirm, show us the output from the command:
Code:
for f in "File 1" "File 2"; do echo "File: $f";head -n 2 "$f"|od -cb;done
I have 2 files pipe delimted and want to merge them based on a key
e.g file 1
123$aaa$yyy$zzz
345$xab$yzy$zyz
456$sss$ttt$foo
799$aaa$ggg$dee
file 2
123$hhh
345$ddd
456$xxx
888$zzz
so if the key is the first field, and the result should be the common key between file 1 and 2 (6 Replies)
Help in writing a script using sed which updates fileOne with the contents from fileTwo
Example:
Contents of fileOne
1,111111
2,897823
3,235473
4,222222
Contents of fileTwo
1,111111,A,1,2
4,222222,A,2,2
5,374632,A,3,2
6,374654,A,4,2
Final File should be:
1,111111,A,1,2... (9 Replies)
Hello everyone!!
I am not completely new to shell script but I havent been able to find the answer to my problem and I'm sure there are some smart brains here up for the challenge :D.
I have several CSV files that I need to combine into one, but I also need to know where each row came from.... (7 Replies)
Hi
I have multiple files each with two columns and I need to combine all those file into a tab delimited file. (multiple entry with same name separated by a comma)
The content of the files are as follows:
---
file1.txt:
name var1
aaa xx
aaa gg
bbb yy
ddd zz
---
file2.txt
... (8 Replies)
I have lot of csv file collected from script like below :
Name of files (some examples) there are thousands of it:
192.168.0.123_251_18796_1433144473.csv
192.168.0.123_251_18796_1433144772.csv
192.168.0.123_251_18796_1433145073.csv
192.168.0.123_251_18796_1433145372.csvContent of each... (5 Replies)
I am trying to merge all csv files from source path into one single csv file in target. but getting error message:
hadoop fs -cat /user/hive/warehouse/stage.db/PK_CLOUD_CHARGE/TCH-charge_*.csv > /user/hive/warehouse/stage.db/PK_CLOUD_CHARGE/final/TCH_pb_charge.csv
getting error message:... (0 Replies)
Hi all,
i need help.
I have two csv files with a huge amount of data.
I need the first column of the first file, to be compared with the data of the second, to have at the end a file with the data not present in the second file.
Example
File1: (only one column)
profile_id
57036226... (11 Replies)
Example:
I have files in below format
file 1:
zxc,133,joe@example.com
cst,222,xyz@example1.com
File 2 Contains:
hxd
hcd
jws
zxc
cst
File 1 has 50000 lines and file 2 has around 30000 lines :
Expected Output has to be :
hxd
hcd
jws (5 Replies)
I have three files with similar pattern i need to merge all the coloumns side by side from all three files according to the first coloumn example as shown below
I mentioned 5 coloumns only in example but i have around 15 coloumns in each file.
file1:
Name,Samples,Error,95RT,90RT... (4 Replies)
Discussion started by: Raghuram717
4 Replies
LEARN ABOUT DEBIAN
csv2mipe
CSV2MIPE(1) User Contributed Perl Documentation CSV2MIPE(1)NAME
csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files
based on MIPE version v1.1
arguments: * tab-delimited file with PCR-level data
* tab-delimited file with SNP-level data
* tab-delimited file with assay-level data
Columns in file with PCR-level data:
pcr_id
pcr_modified (might be multiple, divided by semi-colon ";")
pcr_project (might be multiple, divided by semi-colon ";")
pcr_researcher (might be multiple, divided by semi-colon ";")
pcr_species
source_type
source_id
design_seq
primer1_oligo
primer1_seq
primer1_tm
primer2_oligo
primer2_seq
primer2_tm
design_remark (might be multiple, divided by semi-colon ";")
use_seq
use_revcomp
use_remark (might be multiple, divided by semi-colon ";")
pcr_remark (might be multiple, divided by semi-colon ";")
Columns in file with SNP-level data:
pcr_id
snp_id
snp_pos
snp_amb
snp_remark (might be multiple, divided by semi-colon ";")
Columns in file with assay-level data:
pcr_id
snp_id
assay_id
assay_type
assay_enzyme
assay_oligo
assay_specific
assay_tail
assay_strand
assay_remark (might be multiple, divided by semi-colon ";")
SYNOPSIS
csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>
ADDITIONAL INFO
See http://mipe.sourceforge.net
AUTHOR
Jan Aerts (jan.aerts@bbsrc.ac.uk)
perl v5.14.2 2005-07-20 CSV2MIPE(1)