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Top Forums UNIX for Dummies Questions & Answers Transpose a file Post 302948360 by nans on Monday 29th of June 2015 09:06:13 AM
Old 06-29-2015
Transpose a file
Hello,
I have a file which looks like this

Input:
Code:
Sample    Genotype    Assay    Well    plate
Sample1    T    xx    A01    1
Sample2    T    xx    A01    2
Sample3    T    xx    A01    3
Sample4    T    xx    A02    4
Sample5    T    xx    A02    5
Sample6    T    xx    A02    6
Sample7    NA    xx    B01    7.2
Sample8    T    xx    B01    8
Sample9    T    xx    B01    9
Sample10    T    xx    B01    10
Sample11        xx    B01    11
Sample12    T    xx    B10    1
Sample13    T    xx    C01    2
Sample14    T    xx    C01    3
Sample15    T    xx    C01    4
Sample16    T    xx    C01    5
Sample17    T    xx    C01    6
Sample18    T    xx    C01    7.1
Sample19    C    xx    D02    8
Sample20    C    xx    D02    9
Sample21    T    xx    D02    11.1

and I need to transform it into a grid using three columns, "genotype", "well" as the top row and "plate" as the first column to get an output that looks like this
Code:
       1    2    3    4    5    6    7.1    7.2    8    9    10    11    11.1
A01    T    T    T                                        
A02                T     T    T                            
B01    NA    T    T    T                                    
B10    T                                                
C01        T    T    T    T    T    T                        
D02                                    C    C            T

I can do this with excel but there are 13 "plates" and over 500 "wells". Can this be done using unix? many thanks
 

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LEARN ABOUT MOJAVE

locale::codes::langfam5.18

Locale::Codes::LangFam(3pm)				 Perl Programmers Reference Guide			       Locale::Codes::LangFam(3pm)

NAME

       Locale::Codes::LangFam - standard codes for language extension identification

SYNOPSIS

	  use Locale::Codes::LangFam;

	  $lext = code2langfam('apa');		       # $lext gets 'Apache languages'
	  $code = langfam2code('Apache languages');    # $code gets 'apa'

	  @codes   = all_langfam_codes();
	  @names   = all_langfam_names();

DESCRIPTION

       The "Locale::Codes::LangFam" module provides access to standard codes used for identifying language families, such as those as defined in
       ISO 639-5.

       Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 639-5
       language family codes will be used.

SUPPORTED CODE SETS

       There are several different code sets you can use for identifying language families. A code set may be specified using either a name, or a
       constant that is automatically exported by this module.

       For example, the two are equivalent:

	  $lext = code2langfam('apa','alpha');
	  $lext = code2langfam('apa',LOCALE_LANGFAM_ALPHA);

       The codesets currently supported are:

       alpha
	   This is the set of three-letter (lowercase) codes from ISO 639-5 such as 'apa' for Apache languages.

	   This is the default code set.

ROUTINES

       code2langfam ( CODE [,CODESET] )
       langfam2code ( NAME [,CODESET] )
       langfam_code2code ( CODE ,CODESET ,CODESET2 )
       all_langfam_codes ( [CODESET] )
       all_langfam_names ( [CODESET] )
       Locale::Codes::LangFam::rename_langfam  ( CODE ,NEW_NAME [,CODESET] )
       Locale::Codes::LangFam::add_langfam  ( CODE ,NAME [,CODESET] )
       Locale::Codes::LangFam::delete_langfam  ( CODE [,CODESET] )
       Locale::Codes::LangFam::add_langfam_alias  ( NAME ,NEW_NAME )
       Locale::Codes::LangFam::delete_langfam_alias  ( NAME )
       Locale::Codes::LangFam::rename_langfam_code  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::LangFam::add_langfam_code_alias  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::LangFam::delete_langfam_code_alias  ( CODE [,CODESET] )
	   These routines are all documented in the Locale::Codes::API man page.

SEE ALSO

       Locale::Codes
	   The Locale-Codes distribution.

       Locale::Codes::API
	   The list of functions supported by this module.

       http://www.loc.gov/standards/iso639-5/id.php
	   ISO 639-5 .

AUTHOR

       See Locale::Codes for full author history.

       Currently maintained by Sullivan Beck (sbeck@cpan.org).

COPYRIGHT

	  Copyright (c) 2011-2013 Sullivan Beck

       This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

perl v5.18.2							    2013-11-04					       Locale::Codes::LangFam(3pm)
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