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Full Discussion: Trimming ends
Top Forums UNIX for Dummies Questions & Answers Trimming ends Post 302947486 by RavinderSingh13 on Thursday 18th of June 2015 09:16:36 AM
Old 06-18-2015
Hello Xterra,

Could you please try following and let us know if this helps.
Code:
 awk '{sub(/.*GGGAAA/,X,$0);sub(/AGCCCTA.*/,X,$0);print}'  Input_file

Thanks,
R. Singh
 

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DLAGTS(l)								 )								 DLAGTS(l)

NAME
DLAGTS - may be used to solve one of the systems of equations (T - lambda*I)*x = y or (T - lambda*I)'*x = y, SYNOPSIS
SUBROUTINE DLAGTS( JOB, N, A, B, C, D, IN, Y, TOL, INFO ) INTEGER INFO, JOB, N DOUBLE PRECISION TOL INTEGER IN( * ) DOUBLE PRECISION A( * ), B( * ), C( * ), D( * ), Y( * ) PURPOSE
DLAGTS may be used to solve one of the systems of equations (T - lambda*I)*x = y or (T - lambda*I)'*x = y, where T is an n by n tridiagonal matrix, for x, following the factorization of (T - lambda*I) as (T - lambda*I) = P*L*U , by routine DLAGTF. The choice of equation to be solved is controlled by the argument JOB, and in each case there is an option to perturb zero or very small diagonal elements of U, this option being intended for use in applications such as inverse iteration. ARGUMENTS
JOB (input) INTEGER Specifies the job to be performed by DLAGTS as follows: = 1: The equations (T - lambda*I)x = y are to be solved, but diagonal elements of U are not to be perturbed. = -1: The equa- tions (T - lambda*I)x = y are to be solved and, if overflow would otherwise occur, the diagonal elements of U are to be per- turbed. See argument TOL below. = 2: The equations (T - lambda*I)'x = y are to be solved, but diagonal elements of U are not to be perturbed. = -2: The equations (T - lambda*I)'x = y are to be solved and, if overflow would otherwise occur, the diagonal elements of U are to be perturbed. See argument TOL below. N (input) INTEGER The order of the matrix T. A (input) DOUBLE PRECISION array, dimension (N) On entry, A must contain the diagonal elements of U as returned from DLAGTF. B (input) DOUBLE PRECISION array, dimension (N-1) On entry, B must contain the first super-diagonal elements of U as returned from DLAGTF. C (input) DOUBLE PRECISION array, dimension (N-1) On entry, C must contain the sub-diagonal elements of L as returned from DLAGTF. D (input) DOUBLE PRECISION array, dimension (N-2) On entry, D must contain the second super-diagonal elements of U as returned from DLAGTF. IN (input) INTEGER array, dimension (N) On entry, IN must contain details of the matrix P as returned from DLAGTF. Y (input/output) DOUBLE PRECISION array, dimension (N) On entry, the right hand side vector y. On exit, Y is overwritten by the solution vector x. TOL (input/output) DOUBLE PRECISION On entry, with JOB .lt. 0, TOL should be the minimum perturbation to be made to very small diagonal elements of U. TOL should normally be chosen as about eps*norm(U), where eps is the relative machine precision, but if TOL is supplied as non-positive, then it is reset to eps*max( abs( u(i,j) ) ). If JOB .gt. 0 then TOL is not referenced. On exit, TOL is changed as described above, only if TOL is non-positive on entry. Otherwise TOL is unchanged. INFO (output) INTEGER = 0 : successful exit element of the solution vector x. This can only occur when JOB is supplied as positive and either means that a diagonal element of U is very small, or that the elements of the right-hand side vector y are very large. LAPACK version 3.0 15 June 2000 DLAGTS(l)
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