Sponsored Content
Top Forums Shell Programming and Scripting Explanation of FNR in this awk script Post 302944633 by yifangt on Wednesday 20th of May 2015 06:46:05 PM
Old 05-20-2015
Explanation of FNR in this awk script

To merge mutiple *.tab files as:
file1.tab
Code:
rs1 A A
rs2 A A
rs3 C C
rs4 C C

file2.ind
Code:
rs1 T T
rs2 T T
rs3 G G
rs4 G G

and file3.tab
Code:
rs1 B B
rs2 B B
rs3 L L
rs4 L L

Output:
Code:
file1.tab  file2.tab  file3.tab
AA       TT       BB
AA       TT       BB
CC       GG       LL
CC       GG       LL

which could be done with:
Code:
awk 'BEGIN{for(i=1;i<ARGC;i++)printf ARGV[i]" ";print ""}{a[FNR]=length(a[FNR])?a[FNR]$2$3FS:$2$3FS}END{for(i=0;i++<FNR;)print a[i]}' *.tab

I have hard time to understand a[FNR] and a[FNR]=length(a[FNR]) in the part:
Code:
a[FNR]=length(a[FNR])?a[FNR]$2$3FS:$2$3FS

Can anybody please explain it for me?
Thanks a lot!

Last edited by yifangt; 05-20-2015 at 08:00 PM..
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

AWK explanation

Hi, Could anyone please explain why we have arr=1 - what does this statement do? awk -F\; 'FNR==NR{arr=1;next};$3 in arr' core.txt gmrd.txt Any help appreciated (2 Replies)
Discussion started by: penfold
2 Replies

2. Shell Programming and Scripting

Awk: different between NR and FNR

As I know: FNR: The ordinal number of the current record in the current file. NR: The ordinal number of the current record from the start of input. I don't understand really differency between NR and FNR. Who can explain it for me? And give me an example. Thanks (1 Reply)
Discussion started by: anhtt
1 Replies

3. Shell Programming and Scripting

awk NR==FNR compare 2 files produce a 3rd

hi, i have two files, both with 3 columns, the 3rd column has common values between the two files and i want to produce a 3rd file with 4 columns. file 1 a, ,b c file 2 a, b ,d I want to compare the 3rd value and if a match print to file 3 with the 3 columns from the first file... (11 Replies)
Discussion started by: borderblaster
11 Replies

4. Shell Programming and Scripting

error "awk: (FILENAME=- FNR=23) fatal: division by zero attempted"

Hi , I have file : after i run this command : there are error can we print blank line if output error ?? thanks.. ^^ (4 Replies)
Discussion started by: justbow
4 Replies

5. UNIX for Dummies Questions & Answers

Multiple Column print after lookup using NR==FNR (awk)

foo.txt FAMID IID AFF SEX Group AgeCat Dis1 Dis2 Dis3 Dis4 Dis5 Dis6 Dis6 AMD0001 Mayo_49542 1 2 AMD 8 1 1 1 1 1 1 1 AMD0002 Mayo_49606 1 1 AMD 3 1 1 1 1 ... (7 Replies)
Discussion started by: genehunter
7 Replies

6. UNIX for Dummies Questions & Answers

awk NR==FNR output control

Hi Guys, I have two files: f1: A B C D E F G H f2: A X Y Z f1 has 48000 lines, and f2 has 68. I have been matching f1 $3 to f2 $1, and getting f3: A A B C D E F G I would like f3 too look like this: A X Y Z A B C D E F G (2 Replies)
Discussion started by: heecha
2 Replies

7. Shell Programming and Scripting

Awk FNR==NR question

awk -F'' 'FNR==NR {a=$2; next} {$1=a} 1' $useralias ${entries} >> ${entries}_2 Hi, Is there anyway to alter this command so that if it does not find a match it will just leave the line alone instead of replacing what it doesn't find with a blank space? (4 Replies)
Discussion started by: Jazmania
4 Replies

8. Shell Programming and Scripting

Tip: alternative for NR==FNR in awk

Example: $ cat file1 2 3$ cat file2 1 2 3 4 5 6The following awk script works like a charm, NR==FNR is true for file1, the remainder runs for file2: awk ' NR==FNR {A; next} ($1 in A) ' file1 file2 2 3Now have an empty file1: >file1and run the awk script again. The result is empty... (8 Replies)
Discussion started by: MadeInGermany
8 Replies

9. Shell Programming and Scripting

awk --> selective printout with FNR

Hi everybody! need some awk-support. i want a line-selective printout of a file. wat i normally will do with ... awk ' FNR==8' sample.txt But now i need the data from line 8, 10 and the following data from line13 to 250 wich is not end of the file. I tried allready to combine it but without... (2 Replies)
Discussion started by: IMPe
2 Replies

10. Shell Programming and Scripting

Awk: Assigning a variable to be the value of FNR at a certain line

Sorry for the probably strangely worded title but I don't really know how else to put it. Background context: Post processing LAMMPS simulation data. tl;dr: I'm making two spheres collide, every defined timestep the simulation outputs a bunch of data including total energy of the particles,... (10 Replies)
Discussion started by: ThomasP
10 Replies
Locale::Codes::LangVar(3pm)				 Perl Programmers Reference Guide			       Locale::Codes::LangVar(3pm)

NAME
Locale::Codes::LangVar - standard codes for language variation identification SYNOPSIS
use Locale::Codes::LangVar; $lvar = code2langvar('acm'); # $lvar gets 'Mesopotamian Arabic' $code = langvar2code('Mesopotamian Arabic'); # $code gets 'acm' @codes = all_langvar_codes(); @names = all_langvar_names(); DESCRIPTION
The "Locale::Codes::LangVar" module provides access to standard codes used for identifying language variations, such as those as defined in the IANA language registry. Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default IANA language registry codes will be used. SUPPORTED CODE SETS
There are several different code sets you can use for identifying language variations. A code set may be specified using either a name, or a constant that is automatically exported by this module. For example, the two are equivalent: $lvar = code2langvar('en','alpha-2'); $lvar = code2langvar('en',LOCALE_CODE_ALPHA_2); The codesets currently supported are: alpha This is the set of alphanumeric codes from the IANA language registry, such as 'arevela' for Eastern Armenian. This code set is identified with the symbol "LOCALE_LANGVAR_ALPHA". This is the default code set. ROUTINES
code2langvar ( CODE [,CODESET] ) langvar2code ( NAME [,CODESET] ) langvar_code2code ( CODE ,CODESET ,CODESET2 ) all_langvar_codes ( [CODESET] ) all_langvar_names ( [CODESET] ) Locale::Codes::LangVar::rename_langvar ( CODE ,NEW_NAME [,CODESET] ) Locale::Codes::LangVar::add_langvar ( CODE ,NAME [,CODESET] ) Locale::Codes::LangVar::delete_langvar ( CODE [,CODESET] ) Locale::Codes::LangVar::add_langvar_alias ( NAME ,NEW_NAME ) Locale::Codes::LangVar::delete_langvar_alias ( NAME ) Locale::Codes::LangVar::rename_langvar_code ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangVar::add_langvar_code_alias ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangVar::delete_langvar_code_alias ( CODE [,CODESET] ) These routines are all documented in the Locale::Codes::API man page. SEE ALSO
Locale::Codes The Locale-Codes distribution. Locale::Codes::API The list of functions supported by this module. http://www.iana.org/assignments/language-subtag-registry The IANA language subtag registry. AUTHOR
See Locale::Codes for full author history. Currently maintained by Sullivan Beck (sbeck@cpan.org). COPYRIGHT
Copyright (c) 2011-2013 Sullivan Beck This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.18.2 2014-01-06 Locale::Codes::LangVar(3pm)
All times are GMT -4. The time now is 01:51 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy