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Top Forums Shell Programming and Scripting Match based on criteria to file Post 302943881 by cmccabe on Wednesday 13th of May 2015 02:29:31 PM
Old 05-13-2015
Match based on criteria to file

Trying to match $1 of target.txt to $5 of file.txt. If there is a match then in an output.txt file $1,$1 (row underneath),$6,$4,$7 from file.txt are printed on the same line as $1 of target.txt. The input is from excel and the output should be tab-deliminated. Thank you Smilie.

target.txt
Code:
PXL-A0000005
PXL-A0000007
PXL-A0000014

file.txt
Code:
RefPrimer	ref	antiref	omosome	PrimerSet	SeqRxn	Link 
AntirefPrimer	antiref	ref	omosome			 
PXL-A0000005ref	69066	69311	1	PXL-A0000005	SeqRxn4	 https://www.xxxx.com/add_2_cart.php?catno=PXL-A0000005&storage=lyophilized&rxns=100&num=1&test=mixed&format=tube
PXL-A0000005antiref	69311	69066	1			 
PXL-A0000007ref	69700	70033	1	PXL-A0000007	SeqRxn4	 https://www.xxxx.com/add_2_cart.php?catno=PXL-A0000007&storage=lyophilized&rxns=100&num=1&test=mixed&format=tube
PXL-A0000007antiref	70033	69700	1			 
PXL-A0000014ref	861093	861418	1	PXL-A0000014	SeqRxn4	 https://www.xxxx.com/add_2_cart.php?catno=PXL-A0000014&storage=lyophilized&rxns=100&num=1&test=mixed&format=tube
PXL-A0000014antiref	861418	861093	1

Desired output
Code:
PrimerSet	RefPrimer	AntirefPrimer	SeqRxn	Chr	Link
PXL-A0000005 PXL-A0000005ref PXL-A0000005antiref SeqRxn4 1 https://www.xxxx.com/add_2_cart.php?catno=PXL-A0000005&storage=lyophilized&rxns=100&num=1&test=mixed&format=tube
PXL-A0000007 PXL-A0000007ref PXL-A0000007antiref SeqRxn4 1 https://www.xxxx.com/add_2_cart.php?catno=PXL-A0000007&storage=lyophilized&rxns=100&num=1&test=mixed&format=tube
PXL-A0000014 PXL-A0000014ref PXL-A0000014antiref SeqRxn4 1 https://www.xxxx.com/add_2_cart.php?catno=PXL-A0000014&storage=lyophilized&rxns=100&num=1&test=mixed&format=tube

Code:
 awk '$1 = $5  && $1 != "" {print $1,$1,$6,$4,$7}' FS="\t" OFS="," target.txt file.txt . output.txt

 

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FPRINTF(3)								 1								FPRINTF(3)

fprintf - Write a formatted string to a stream

SYNOPSIS
int fprintf (resource $handle, string $format, [mixed $args], [mixed $...]) DESCRIPTION
Write a string produced according to $format to the stream resource specified by $handle. PARAMETERS
o $handle -A file system pointer resource that is typically created using fopen(3). o $format - See sprintf(3) for a description of $format. o $args - o $... - RETURN VALUES
Returns the length of the string written. EXAMPLES
Example #1 fprintf(3): zero-padded integers <?php if (!($fp = fopen('date.txt', 'w'))) { return; } fprintf($fp, "%04d-%02d-%02d", $year, $month, $day); // will write the formatted ISO date to date.txt ?> Example #2 fprintf(3): formatting currency <?php if (!($fp = fopen('currency.txt', 'w'))) { return; } $money1 = 68.75; $money2 = 54.35; $money = $money1 + $money2; // echo $money will output "123.1"; $len = fprintf($fp, '%01.2f', $money); // will write "123.10" to currency.txt echo "wrote $len bytes to currency.txt"; // use the return value of fprintf to determine how many bytes we wrote ?> SEE ALSO
printf(3), sprintf(3), sscanf(3), fscanf(3), vsprintf(3), number_format(3). PHP Documentation Group FPRINTF(3)
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