I hope this is more clear:
I am trying to use the two files shown below to either remove or rename contents in one of those files. If in combine.txt $5 matches $5 of output.txt and the value in $1 of combine.txt is not "No Match" then that value is substituted for all values in $5 and $1 of output.txt. If however in $1 of combine.txt the value is "No Match", then the row in output.txt with that $5 value in it and the one below it are removed. Thank you .
For example,
"DTE3504500000004" is the value of $5 in combine.txt and that matches row 3 of output.txt $5 , since the value in $1 of combine.txt is "No Match", rows 9 and 10 are removed from output.txt.
"DTE3504500000005" is the value of $5 in combine.txt and that matches row 11 of output.txt $5 , since the value in $1 of combine.txt is not "No Match", rather "PXL-A0000005" that new value is used to replace all occurrences of the old value in output.txt.
Code:
file1.txt
No Match chr1 35696 36106 DTE3504500000004
PXL-A0000005 chr1 69066 69311 DTE3504500000005
Hi
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Hello guys, thank God that I found this forum.
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So, this issue is driving me nuts! I was hoping to get a lending hand here...
I have 2 files:
file1.txt contains:
this is example1
this is example2
this is example3
this is example4
this is example5
file2.txt contains:
example3
example5
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Hi,
I have a file nexus-1234 in a directory. I want to generate a random number and replace the 1234 with it and rename the file.
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Hi
I have 2 files
1.del
----
1,2,3,4,5
1,2,3,4,4
1,1,1,1,2
2.del
----
1,2,3,4,5
1,
1,2,3,4,4
1,1,1,1,2
I need to compare the above two files in unix, as in the output should only tell the difference in contents as I should get only the line
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Good day all.
Using basic UNIX/Linux tools, how would you delete a line based on a character found in column 1?
For example, if the CITY name contains an 'a' or 'A', delete the line:
New York City; New York
Los Angeles; California
Chicago; Illinois
Houston; Texas
Philadelphia;... (3 Replies)
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hello Friend,
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for example.
define hostgroup{
hostgroup_name... (8 Replies)
In the below there are two generic .vcf files (genome.S1.vcf and genome.S2.vcf) in a directory. There wont always be two genaric files but I am trying to use bash to rename each of these generic files with specfic text (unique identifier) within in each .vcf. The text will always be different, but... (11 Replies)
Discussion started by: cmccabe
11 Replies
LEARN ABOUT DEBIAN
parallel-slurp
PARALLEL-SLURP(1)PARALLEL-SLURP(1)NAME
parallel-slurp - copy files from listed hosts
SYNOPSIS
parallel-slurp [OPTIONS] -h hosts.txt -L destdir remote local
DESCRIPTION
pssh provides a number of commands for executing against a group of computers, using SSH. It's most useful for operating on clusters of
homogenously-configured hosts.
parallel-slurp gathers specified files from hosts you listed.
OPTIONS -r --recursive
recusively copy directories (OPTIONAL)
-L --localdir
output directory for remote file copies
-h --hosts
hosts file (each line "host[:port] [user]")
-l --user
username (OPTIONAL)
-p --par
max number of parallel threads (OPTIONAL)
-o --outdir
output directory for stdout files (OPTIONAL)
-e --errdir
output directory for stderr files (OPTIONAL)
-t --timeout
timeout (secs) (-1 = no timeout) per host (OPTIONAL)
-O --options
SSH options (OPTIONAL)
-v --verbose
turn on warning and diagnostic messages (OPTIONAL)
EXAMPLE
An example to copy /home/irb2/foo.txt from each host. Files gathered will be stored in /tmp/outdir/hostname/foo.txt.
# prallel-slurp -h hosts.txt -L /tmp/outdir -l irb2
/home/irb2/foo.txt foo.txt
ENVIRONMENT
All four programs take similar sets of options. All of these options can be set using the following environment variables:
o PSSH_HOSTS
o PSSH_USER
o PSSH_PAR
o PSSH_OUTDIR
o PSSH_VERBOSE
o PSSH_OPTIONS
SEE ALSO parallel-ssh(1), parallel-scp(1), parallel-nuke(1), parallel-rsync(1), ssh(1)AUTHOR
Brent N. Chun <bnc@theether.org>
COPYING
Copyright: 2003, 2004, 2005, 2006, 2007 Brent N. Chun
NOTES
1. bnc@theether.org
mailto:bnc@theether.org
03/30/2009 PARALLEL-SLURP(1)