Sponsored Content
Top Forums Shell Programming and Scripting How to use a loop for multiple files in a folder to run awk command? Post 302940851 by RudiC on Thursday 9th of April 2015 12:45:33 PM
Old 04-09-2015
You forgot to mention which OS and shell you are using. With bourne type shells, this might work:
Code:
ls *.geno | while read FN; do awk -f example.awk $FN final.map > ${FN/geno/dat}; done

These 3 Users Gave Thanks to RudiC For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

How to run awk command having multiple lines

Hi, Can u see the code below. set xyz = `cat testt1.txt | awk '/-----/{\ print $1 }\ ' | tail -1` I need to execute it in c shell . What is wrong with the above command. When i write everything on a single line then it is working. Can anybody help me . (0 Replies)
Discussion started by: nani_g
0 Replies

2. UNIX for Dummies Questions & Answers

Foreach loop to run a perl script on multiple files

Hi, I have thousands of files in a directory that have the following 2 formats: 289620178.aln 289620179.aln 289620180.aln 289620183.aln 289620184.aln 289620185.aln 289620186.aln 289620187.aln 289620188.aln 289620189.aln 289620190.aln 289620192.aln.... and: alnCDS_1.fasta (1 Reply)
Discussion started by: greptastic
1 Replies

3. Shell Programming and Scripting

How to run multiple awk files

I'm trying some thing like this. But not working It worked for bash files Now I want some thing like that along with multiple input files by redirecting their outputs as inputs of next command like below Could you guyz p0lz help me on this #!/usr/bin/awk -f BEGIN { } script1a.awk... (2 Replies)
Discussion started by: repinementer
2 Replies

4. Shell Programming and Scripting

using mv command for moving multiple files in a folder

Hi, I have a requirement where I need to move Bunch of folders containing multiple files to another archive location. i want to use mv command .I am thinking when we use mv command to move directory does it create directory 1st and then move all the files ? e.g source... (4 Replies)
Discussion started by: rkmbcbs
4 Replies

5. Shell Programming and Scripting

Receiving 'ambiguous redirect' when trying to run command against multiple files

I came across the command string on https://www.unix.com/shell-programming-scripting/141885-awk-removing-data-before-after-pattern.html which was what I was looking for to be able to remove data before a certain pattern. However, outputting the result to a file seems to work on an individual basis... (4 Replies)
Discussion started by: HLee1981
4 Replies

6. Shell Programming and Scripting

Loop for row-wise averaging of multiple files using awk

Hello all, I need to compute a row-wise average of files with a single column based on the pattern of the filenames. I really appreciate any help on this. it would just be very difficult to do them manually as the rows are mounting to 100,000 lines. the filenames are as below with convention as... (2 Replies)
Discussion started by: ida1215
2 Replies

7. Shell Programming and Scripting

Script for telnet and run one command kill it and run another command using while loop

( sleep 3 echo ${LOGIN} sleep 2 echo ${PSWD} sleep 2 while read line do echo "$line" PID=$? sleep 2 kill -9 $PID done < temp sleep 5 echo "exit" ) | telnet ${HOST} while is executing only command and exits. (5 Replies)
Discussion started by: sooda
5 Replies

8. Shell Programming and Scripting

FOR loop with multiple files as input and awk

Hi all , i want to pass multiple files as input to a for loop for i in file1 file2 file3 do some awk action < $i >> $i.out done but im getting error in that for loop is the way i use to pass files to awk using for correct and 2.we can directly pass multiple files to awk as... (7 Replies)
Discussion started by: zozoo
7 Replies

9. UNIX for Dummies Questions & Answers

Loop awk command on files in a folder

Hi, I'd like to loop an action over all files with given extension within a folder. The "main" action is: awk -F "\t" 'BEGIN{OFS="\t"}{if ($10=="S") print$0; }' input.txt > output.txt The input.txt should be every file in the folder with *.subVCF extension; and the output should be a file... (3 Replies)
Discussion started by: dovah
3 Replies

10. Programming

Run sed and awk in multiple files in adirectory

Dear linux users I was running around of 200 djob for a Blastp search in a cluster. All my input files were protein fasta file (prot.fna.1, prot.fna.2 ...prot.fna.200). The output of each individual slurm job is located in a corresponding file ending with *test (prot.fna.1.test,... (10 Replies)
Discussion started by: Dieunel
10 Replies
Locale::Codes::LangFam(3pm)				 Perl Programmers Reference Guide			       Locale::Codes::LangFam(3pm)

NAME
Locale::Codes::LangFam - standard codes for language extension identification SYNOPSIS
use Locale::Codes::LangFam; $lext = code2langfam('apa'); # $lext gets 'Apache languages' $code = langfam2code('Apache languages'); # $code gets 'apa' @codes = all_langfam_codes(); @names = all_langfam_names(); DESCRIPTION
The "Locale::Codes::LangFam" module provides access to standard codes used for identifying language families, such as those as defined in ISO 639-5. Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 639-5 language family codes will be used. SUPPORTED CODE SETS
There are several different code sets you can use for identifying language families. A code set may be specified using either a name, or a constant that is automatically exported by this module. For example, the two are equivalent: $lext = code2langfam('apa','alpha'); $lext = code2langfam('apa',LOCALE_LANGFAM_ALPHA); The codesets currently supported are: alpha This is the set of three-letter (lowercase) codes from ISO 639-5 such as 'apa' for Apache languages. This is the default code set. ROUTINES
code2langfam ( CODE [,CODESET] ) langfam2code ( NAME [,CODESET] ) langfam_code2code ( CODE ,CODESET ,CODESET2 ) all_langfam_codes ( [CODESET] ) all_langfam_names ( [CODESET] ) Locale::Codes::LangFam::rename_langfam ( CODE ,NEW_NAME [,CODESET] ) Locale::Codes::LangFam::add_langfam ( CODE ,NAME [,CODESET] ) Locale::Codes::LangFam::delete_langfam ( CODE [,CODESET] ) Locale::Codes::LangFam::add_langfam_alias ( NAME ,NEW_NAME ) Locale::Codes::LangFam::delete_langfam_alias ( NAME ) Locale::Codes::LangFam::rename_langfam_code ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangFam::add_langfam_code_alias ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangFam::delete_langfam_code_alias ( CODE [,CODESET] ) These routines are all documented in the Locale::Codes::API man page. SEE ALSO
Locale::Codes The Locale-Codes distribution. Locale::Codes::API The list of functions supported by this module. http://www.loc.gov/standards/iso639-5/id.php ISO 639-5 . AUTHOR
See Locale::Codes for full author history. Currently maintained by Sullivan Beck (sbeck@cpan.org). COPYRIGHT
Copyright (c) 2011-2012 Sullivan Beck This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.16.2 2012-10-11 Locale::Codes::LangFam(3pm)
All times are GMT -4. The time now is 01:10 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy