How to use a loop for multiple files in a folder to run awk command?
Dear folks
I have two data set which there names are "final.map" and "1.geno" and look like this structures: final.map:
1.geno:
Now, I am trying to run this command below:
In this command "example.awk" contains the below command: NR==FNR{a[$1,$2]=$5" "$6" "$7;next}{print $1,$2,a[$1,$2]?a[$1,$2]:"0 0 0"}
the output of the awk command give us "1.dat" which is
My problem is I have around 300 *.geno files which I want to get *.dat out of the awk command. I am knowing the loop in unix could be helpful but I think I am using the loop wrong in some way.
Could any one give me an idea how to avoid to run awk each time separately and do it at one time by looping?
Last edited by vgersh99; 04-09-2015 at 02:07 PM..
Reason: code tags, please!
Hi,
Can u see the code below.
set xyz = `cat testt1.txt | awk '/-----/{\
print $1 }\
' | tail -1`
I need to execute it in c shell . What is wrong with the above command.
When i write everything on a single line then it is working.
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Hi,
I have thousands of files in a directory that have the following 2 formats:
289620178.aln
289620179.aln
289620180.aln
289620183.aln
289620184.aln
289620185.aln
289620186.aln
289620187.aln
289620188.aln
289620189.aln
289620190.aln
289620192.aln....
and:
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BEGIN
{
}
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