Longhand using builtins only to show that it can be done, (there are much better methods), using OSX 10.7.5, default bash terminal:-
Results:-
IMPORTANT NOTE: You have asked for TAB delimiters but have shown SPACE delimiters so be aware that this is TAB not SPACE! Hence the hexdump.
Also trailing newlines can be a problem but not in this particular case...
EDIT:
What have you attempted so far?
Also there are only nelines are carriage returns needed with the newlines too?
Last edited by wisecracker; 04-05-2015 at 01:38 PM..
Reason: See above...
i have a file whose data is like this::
osr_pe_assign|-120|wg000d@att.com|4|
osr_evt|-21|wg000d@att.com|4|
pe_avail|-21|wg000d@att.com|4|
osr_svt|-11|wg000d@att.com|4|
pe_mop|-13|wg000d@att.com|4|
instar_ready|-35|wg000d@att.com|4|
nsdnet_ready|-90|wg000d@att.com|4|... (6 Replies)
Hello Gurus,
I have a text file containing nearly 12,000 tab delimited characters with 4000 rows. If the file size is small, excel can convert the text into coloumns. However, the file that I have is very big. Can some body help me in solving this problem?
The input file example,
... (6 Replies)
I have a text file that made using text editor in Ubuntu. However the text file is not being recognized as space or tab delimited, the formatting seems to be messed up. How can I convert the text file into tab delimited format? (3 Replies)
Hi All,
I have space delimited file similar to the one as shown below.. I need to convert it as a pipe delimited, the values inside the pipe delimited file should be as highlighted...
AA ATIU2345098809 009697 005374
BB ATIU2345097809 005445 006518
CC ATIU9685098809 003215 003571
DD... (7 Replies)
I have a file which was pipe delimited, I need to make it tab delimited. I tried with sed but no use
cat file | sed 's/|//t/g'
The above command substituted "/t" not tab in the place of pipe.
Sample file:
abc|123|2012-01-30|2012-04-28|xyz
have to convert to:
abc 123... (6 Replies)
Hi How to make tab delimited file to space delimited?
in put file:
ABC kgy
jkh ghj
ash kjl
o/p file:
ABC kgy
jkh ghj
ash kjl
Use code tags, thanks. (1 Reply)
Hi
i have a problem in my job
i try to convert an excel file (xls extention) to text file (tab delimited), but no result with this comand
cat xxx.xls > xxx.txt
Do you have eny idea?
PS: sorry for my english
Thanks!! (4 Replies)
Hi All,
How can we convert pipe delimited ( or comma ) file to vertical tab (VT) delimited.
Regards
PK (4 Replies)
Discussion started by: prasson_ibm
4 Replies
LEARN ABOUT DEBIAN
vcf-isec
VCF-ISEC(1) User Commands VCF-ISEC(1)NAME
vcf-isec - create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files
SYNOPSIS
vcf-isec [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files.
Note that lines from all files can be intermixed together on the output, which can yield unexpected results.
OPTIONS -C, --chromosomes <list|file>
Process the given chromosomes (comma-separated list or one chromosome per line in a file).
-c, --complement
Output positions present in the first file but missing from the other files.
-d, --debug
Debugging information
-f, --force
Continue even if the script complains about differing columns.
-o, --one-file-only
Print only entries from the left-most file. Without -o, all unique positions will be printed.
-n, --nfiles [+-=]<int>
Output positions present in this many (=), this many or more (+), or this many or fewer (-) files.
-p, --prefix <path>
If present, multiple files will be created with all possible isec combinations. (Suitable for Venn Diagram analysis.)
-t, --tab <chr:pos:file>
Tab-delimited file with indexes of chromosome and position columns. (1-based indexes)
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
EXAMPLES
bgzip file.vcf; tabix -p vcf file.vcf.gz bgzip file.tab; tabix -s 1 -b 2 -e 2 file.tab.gz
vcf-isec 0.1.5 July 2011 VCF-ISEC(1)