I want to compare two files and put difference into another file.
file1 having 84M records and file2 having 85M records. I tried the below command to get the difference and it is not showing the output after sometime i killed the command.
I have searched about 30 threads, a load of Google pages and cannot find what I am looking for. I have some of the parts but not the whole. I cannot seem to get the puzzle fit together.
I have three folders, two of which contain different versions of multiple files, dist/file1.php dist/file2.php... (4 Replies)
Hi, all:
I've got two folders, say, "folder1" and "folder2".
Under each, there are thousands of files.
It's quite obvious that there are some files missing in each. I just would like to find them. I believe this can be done by "diff" command.
However, if I change the above question a... (1 Reply)
I have four files, I need to compare these files together.
As such i know "sdiff and comm" commands but these commands compare 2 files together. If I use sdiff command then i have to compare each file with other which will increase the codes.
Please suggest if you know some commands whcih can... (6 Replies)
Hi All,
I have a requirement where I need to compare 2 files & if the values in the files match, it should proceed, else exit the script without proceeding further.
For e.g : Scenario 1
In this case, the script should exit without proceeding further.
Scenario 2
In this case, the script... (7 Replies)
Hi,
I need help in shell scripting. If someone can help me, that would be great!
Problem. I want Linux Script to compare two folders and copy missing files.
Description.
I have two directories
/dir1
/dir2
I need to copy all distinct/new/unique/missing files from /dir1 and that... (1 Reply)
I have this code
awk 'NR==FNR{a=$1;next} a' file1 file2
which does what I need it to do, but for only two files. I want to make it so that I can have multiple files (for example 30) and the code will return only the items that are in every single one of those files and ignore the ones... (7 Replies)
Hello everybody
Looking for help in comparing two files in Linux(files are big 800MB each).
Example:-
File1 has below data
$ cat file1
5,6,3
2.1.4
1,1,1
8,9,1
File2 has below data
$ cat file2
5,6,3
8,9,8
1,2,1
2,1,4 (1 Reply)
Hello everybody
Looking for help in comparing two files in Linux(files are big 800MB each).
Example:-
File1 has below data
$ cat file1
5,6,3
2.1.4
1,1,1
8,9,1
File2 has below data
$ cat file2
5,6,3
8,9,8
1,2,1
2,1,4 (8 Replies)
Discussion started by: shanul karim
8 Replies
LEARN ABOUT DEBIAN
vcf-compare
VCF-COMPARE(1) User Commands VCF-COMPARE(1)NAME
vcf-compare - compare bgzipped and tabix indexed VCF files
SYNOPSIS
compare-vcf [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Compare bgzipped and tabix indexed VCF files. (E.g. bgzip file.vcf; tabix -p vcf file.vcf.gz)
OPTIONS -c, --chromosomes <list|file>
Same as -r, left for backward compatibility. Please do not use as it will be dropped in the future.
-d, --debug
Debugging information. Giving the option multiple times increases verbosity
-H, --cmp-haplotypes
Compare haplotypes, not only positions
-m, --name-mapping <list|file>
Use with -H when comparing files with differing column names. The argument to this options is a comma-separated list or one mapping
per line in a file. The names are colon separated and must appear in the same order as the files on the command line.
-R, --refseq <file>
Compare the actual sequence, not just positions. Use with -w to compare indels.
-r, --regions <list|file>
Process the given regions (comma-separated list or one region per line in a file).
-s, --samples <list>
Process only the listed samples. Excluding unwanted samples may increase performance considerably.
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
vcf-compare 0.1.5 July 2011 VCF-COMPARE(1)