"${id}.txt.hg19_multianno.txt" the green highlight will have S1 - AP1 as row headers. It will also have data in those columns (in this case 87)... A1 - R1 (headers only) and AQ1-AX1 (headers only). No data is needed for those columns (only the headers). I have a SQL import that is expecting all those columns in one file.
So, the text in bold is added to the "${id}.txt.hg19_multianno.txt" and a new file with the combined is saved in the path. I hope this helps and apologize for the confusion. Thank you for all your help .
Hi All,
I need to pass a variable to perl script from bash script, where in perl i am using if condition. Here is the cmd what i am using in perl
FROM_DATE="06/05/2008"
TO_DATE="07/05/2008"
"perl -ne ' print if ( $_ >="$FROM_DATE" && $_ <= "$TO_DATE" ) ' filename"
filename has... (10 Replies)
I am trying to use a script to replace the header of each file, whose filename are stored within the array $test, using the sed command within a Perl script as follows:
$count = 0;
while ( $count < $#test )
{
`sed -e 's/BIOGRF 321/BIOGRF 332/g' ${test} > 0`;
`cat 0 >... (2 Replies)
I am fiddling with a little script that will issue a shutdown command if the temperature on the CPU goes above a certain level. I started writing the script in Bash, and then thought I would like to use Perl to extract the detailed bits, but I am not sure if this is really practical. Basically I... (2 Replies)
Hi Everyone,
i have a string 00:44:40
so:
$tmp=~ s/://gi;
$tmp=~s/({2})({2})({2})/$1*3600+$2*60+$3/e;
the output is 2680.
Any way to combine this two lines into a single line?
Thanks (4 Replies)
Hi,
I have tried several times but failed, I need to call this script from the perl script. This one line script will be sent to /var/tmp/error
Bash command:
/usr/openv/netbackup/bin/admincmd/bperror -backstat -l -hoursago 12 |awk '{ print $19, $12, $14, $16}'|grep -vi default|sort >... (12 Replies)
so in unix this command works works and shows me a list of directories
find . -name \*.xls -exec dirname {} \; | sort -u | > list.txt
but when i try running a perl script to run this command
my $query = 'find . -name \*.xls -exec dirname {} \; | sort -u | > list.txt';... (2 Replies)
Server: IBM p770
OS: AIX 6.1 TL5 SP1
When one of our develoeprs types "bash" on the command line to switch shells, it hangs. For some reason, two bash processes are created....the first bash process spawns a second bash process in the same console, causing a hang. Anyone have any idea what... (2 Replies)
I'm reading about debugging aids in bash and have come across the set command. It says in my little book that an addition to typing
set
you can also use them "on the command line when running a script..." and it lists this in a small table:
set -o option Command Line... (5 Replies)
In a bash script, one can call a perl command in the following manner, where "myperlcommand" is a perl command.
perl -e 'myperlcommand(arguments)'
perl -e 'print("UUUU"x4)'
Now, how can one call a bash command from within a perl script? (Suppose that mybashcommand is a bash... (1 Reply)
How to run several bash commands put in bash command line without needing and requiring a script file.
Because I'm actually a windows guy and new here so for illustration is sort of :
$ bash "echo ${PATH} & echo have a nice day!"
will do output, for example:... (4 Replies)
Discussion started by: abdulbadii
4 Replies
LEARN ABOUT DEBIAN
h5jam
h5jam(1) General Commands Manual h5jam(1)NAME
h5jam - Add a user block to a HDF5 file
SYNOPSIS
h5jam -u user_block -i in_file.h5 [-o out_file.h5] [--clobber]
DESCRIPTION
h5jam concatenates a user_block file and an HDF5 file to create an HDF5 file with a user block. The user block can be either binary or
text. The output file is padded so that the HDF5 header begins on byte 512, 1024, etc.. (See the HDF5 File Format.)
If out_file.h5 is given, a new file is created with the user_block followed by the contents of in_file.h5. In this case, infile.h5 is
unchanged.
If out_file.h5 is not specified, the user_block is added to in_file.h5.
If in_file.h5 already has a user block, the contents of user_block will be added to the end of the existing user block, and the file
shifted to the next boundary. If --clobber is set, any existing user block will be overwritten.
EXAMPLE USAGE
Create new file, newfile.h5, with the text in file mytext.txt as the user block for the HDF5 file file.h5.
h5jam -u mytext.txt -i file.h5 -o newfile.h5
Add text in file mytext.txt to front of HDF5 dataset, file.h5.
h5jam -u mytext.txt -i file.h5
Overwrite the user block (if any) in file.h5 with the contents of mytext.txt.
h5jam -u mytext.txt -i file.h5 --clobber
RETURN VALUE
h5jam returns the size of the output file, or -1 if an error occurs.
CAVEATS
This tool copies all the data (sequentially) in the file(s) to new offsets. For a large file, this copy will take a long time.
The most efficient way to create a user block is to create the file with a user block (see H5Pset_user_block), and write the user block
data into that space from a program.
The user block is completely opaque to the HDF5 library and to the h5jam and h5unjam tools. The user block is simply read or written as a
string of bytes, which could be text or any kind of binary data. It is up to the user to know what the contents of the user block means
and how to process it.
When the user block is extracted, all the data is written to the output, including any padding or unwritten data.
This tool moves the HDF5 file through byte copies, i.e., it does not read or interpret the HDF5 objects.
SEE ALSO h5dump(1), h5ls(1), h5diff(1), h5import(1), gif2h5(1), h52gif(1), h5perf(1), h5unjam(1).
h5jam(1)
03-30-2015
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