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Full Discussion: Uniq count second column
Top Forums Shell Programming and Scripting Uniq count second column Post 302939155 by Wan Fahmi on Monday 23rd of March 2015 08:35:02 AM
Old 03-23-2015
Thanks! As you said because uniq works with sort and count the redundant adjacent line. So I combine both uniq and sort to get the desired output. Here is my code;

Code:
 cat file |sort -k1 -u | sort -k2 | uniq -cf1| sort -rn

The output as here;

Code:
633 ERR315389.1008500       GAAGAATTGAAAACTGTGACGAACAACTTGAAGTCACTGGAGGCTCAGGCTGAGAAGTACTCGCAGAAGGAAGACAGATATGAGGAAGAGATCAAGGTCCT
    519 ERR315389.1012317       CGAAGATGAACTGGACAAATACTCTGAGGCTCTCAAAGATGCCCAGGAGAAGCTGGAGCTGGCAGAGAAAAAGGCCACCGATGCTGAAGCCGACGTAGCTT
    500 ERR315389.1004436       CTTGGATCGAGCTGAGCAGGCGGAGGCCGACAAGAAGGCGGCGGAAGACAGGAGCAAGCAGCTGGAAGATGAGCTGGTGTCACTGCAAAAGAAACTCAAGG
    481 ERR315389.1029324       GTTGGATCGTGCCCAGGAGCGTCTGGCAACAGCTTTGCAGAAGCTGGAGGAAGCTGAGAAGGCAGCAGATGAGAGTGAGAGAGGCATGAAAGTCATTGAGA
    464 ERR315389.10163 CTTGAAGTCACTGGAGGCTCAGGCTGAGAAGTACTCGCAGAAGGAAGACAGATATGAGGAAGAGATCAAGGTCCTTTCCGACAAGCTGAAGGAGGCTGAGA
    369 ERR315389.1010914       CCGAGCTTGAAGAAGAATTGAAAACTGTGACGAACAACTTGAAGTCACTGGAGGCTCAGGCTGAGAAGTACTCGCAGAAGGAAGACAGATATGAGGAAGAG
    365 ERR315389.1010286       CTGAGCTCTCAGAAGGCAAATGTGCCGAGCTTGAAGAAGAATTGAAAACTGTGACGAACAACTTGAAGTCACTGGAGGCTCAGGCTGAGAAGTACTCGCAG
    342 ERR315389.1005391       CTCGGGCTGAGTTTGCGGAGAGGTCAGTAACTAAATTGGAGAAAAGCATTGATGACTTAGAAGACGAGCTGTACGCTCAGAAACTGAAGTACAAAGCCATC
    296 ERR315389.1005033       AAAAAATGGAAATTCAGGAGATCCAACTGAAAGAGGCAAAGCACATTGCTGAAGATGCCGACCGCAAATATGAAGAGGTGGCCCGTAAGCTGGTCATCATT
    289 ERR315389.1001141       AAAAAGGCCACCGATGCTGAAGCCGACGTAGCTTCTCTGAACAGACGCATCCAGCTGGTTGAGGAAGAGTTGGATCGTGCCCAGGAGCGTCTGGCAACAGC



Thanks again!
 

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UNIQ(1) 							   User Commands							   UNIQ(1)

NAME
uniq - report or omit repeated lines SYNOPSIS
uniq [OPTION]... [INPUT [OUTPUT]] DESCRIPTION
Filter adjacent matching lines from INPUT (or standard input), writing to OUTPUT (or standard output). With no options, matching lines are merged to the first occurrence. Mandatory arguments to long options are mandatory for short options too. -c, --count prefix lines by the number of occurrences -d, --repeated only print duplicate lines, one for each group -D print all duplicate lines --all-repeated[=METHOD] like -D, but allow separating groups with an empty line; METHOD={none(default),prepend,separate} -f, --skip-fields=N avoid comparing the first N fields --group[=METHOD] show all items, separating groups with an empty line; METHOD={separate(default),prepend,append,both} -i, --ignore-case ignore differences in case when comparing -s, --skip-chars=N avoid comparing the first N characters -u, --unique only print unique lines -z, --zero-terminated line delimiter is NUL, not newline -w, --check-chars=N compare no more than N characters in lines --help display this help and exit --version output version information and exit A field is a run of blanks (usually spaces and/or TABs), then non-blank characters. Fields are skipped before chars. Note: 'uniq' does not detect repeated lines unless they are adjacent. You may want to sort the input first, or use 'sort -u' without 'uniq'. Also, comparisons honor the rules specified by 'LC_COLLATE'. AUTHOR
Written by Richard M. Stallman and David MacKenzie. REPORTING BUGS
GNU coreutils online help: <http://www.gnu.org/software/coreutils/> Report uniq translation bugs to <http://translationproject.org/team/> COPYRIGHT
Copyright (C) 2017 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>. This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. SEE ALSO
comm(1), join(1), sort(1) Full documentation at: <http://www.gnu.org/software/coreutils/uniq> or available locally via: info '(coreutils) uniq invocation' GNU coreutils 8.28 January 2018 UNIQ(1)
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