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Top Forums Shell Programming and Scripting Append data by looking up 2 tables for multiple files Post 302938220 by ritakadm on Friday 13th of March 2015 09:17:33 AM
Old 03-13-2015
Append data by looking up 2 tables for multiple files

I want to lookup values from two different tables based on common columns and append. The trick is the column to be looked up is not fixed and varies , so it has to be detected from the header. How can I achieve this at once, for multiple data files, but lookup tables fixed.

The two lookup tables are ftable and ttable. For ftable I want cols 2 and 3 by matching 1.

For ttable, I want just col 2 based on col1.



ftable
Code:
fin,evalue,count2
abc,e1,7
xyz,e7,2


ttable
Code:
tin,count
ghi,11
fgr,22


in the input files , we must detect the column with header rid , that matches with ftable and the column header tid which matches with ttable


1st file from Loc B
Code:
mid,rid,tid,xid
1,abc,23,ghi,d
2,abc,,fgr,t

2nd File from expA
Code:
fid,mid,rid,tid,xid
001,1,abc,23,ghi,d
002,2,xyz,,ghi,t
003,3,xyz,1,fgr,34

Desired outputs
1st file from Loc B
Code:
mid,rid,tid,xid,evalue,count2,count
1,abc,23,ghi,d,e1,7,11
2,abc,,fgr,t,e1,7,22


2nd File from expA

Code:
fid,mid,rid,tid,xid,evalue,count2,count
001,1,abc,23,ghi,d,e1,7,11
002,2,xyz,,ghi,t,e7,2,11
003,3,xyz,1,fgr,34,e7,2,22

My try only for the 1st lookup
Code:
awk -F"," 'NR==FNR{f[$1]=$2","$3;next} NR==1 { (for i=1;i<=NF;i++) { if (i=="rid" ) { ftab=i } } print $0",evalue,count2" } NR!=1 && $ftab in f {print $0","f[$ftab]}' ftable  "1st file from Loc B"

 

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Char(3) 						User Contributed Perl Documentation						   Char(3)

NAME
PDL::Char -- PDL subclass which allows reading and writing of fixed-length character strings as byte PDLs SYNOPSIS
use PDL; use PDL::Char; my $pchar = PDL::Char->new( [['abc', 'def', 'ghi'],['jkl', 'mno', 'pqr']] ); $pchar->setstr(1,0,'foo'); print $pchar; # 'string' bound to "", perl stringify function # Prints: # [ # ['abc' 'foo' 'ghi'] # ['jkl' 'mno' 'pqr'] # ] print $pchar->atstr(2,0); # Prints: # ghi DESCRIPTION
This subclass of PDL allows one to manipulate PDLs of 'byte' type as if they were made of fixed length strings, not just numbers. This type of behavior is useful when you want to work with charactar grids. The indexing is done on a string level and not a character level for the 'setstr' and 'atstr' commands. This module is in particular useful for writing NetCDF files that include character data using the PDL::NetCDF module. FUNCTIONS
new Function to create a byte PDL from a string, list of strings, list of list of strings, etc. # create a new PDL::Char from a perl array of strings $strpdl = PDL::Char->new( ['abc', 'def', 'ghij'] ); # Convert a PDL of type 'byte' to a PDL::Char $strpdl1 = PDL::Char->new (sequence (byte, 4, 5)+99); $pdlchar3d = PDL::Char->new([['abc','def','ghi'],['jkl', 'mno', 'pqr']]); string Function to print a character PDL (created by 'char') in a pretty format. $char = PDL::Char->new( [['abc', 'def', 'ghi'], ['jkl', 'mno', 'pqr']] ); print $char; # 'string' bound to "", perl stringify function # Prints: # [ # ['abc' 'def' 'ghi'] # ['jkl' 'mno' 'pqr'] # ] # 'string' is overloaded to the "" operator, so: # print $char; # should have the same effect. setstr Function to set one string value in a character PDL. The input position is the position of the string, not a character in the string. The first dimension is assumed to be the length of the string. The input string will be null-padded if the string is shorter than the first dimension of the PDL. It will be truncated if it is longer. $char = PDL::Char->new( [['abc', 'def', 'ghi'], ['jkl', 'mno', 'pqr']] ); $char->setstr(0,1, 'foobar'); print $char; # 'string' bound to "", perl stringify function # Prints: # [ # ['abc' 'def' 'ghi'] # ['foo' 'mno' 'pqr'] # ] $char->setstr(2,1, 'f'); print $char; # 'string' bound to "", perl stringify function # Prints: # [ # ['abc' 'def' 'ghi'] # ['foo' 'mno' 'f'] -> note that this 'f' is stored "f" # ] atstr Function to fetch one string value from a PDL::Char type PDL, given a position within the PDL. The input position of the string, not a character in the string. The length of the input string is the implied first dimension. $char = PDL::Char->new( [['abc', 'def', 'ghi'], ['jkl', 'mno', 'pqr']] ); print $char->atstr(0,1); # Prints: # jkl perl v5.12.1 2009-10-17 Char(3)
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