I am having a little trouble with some things using the code below:
1.
Code:
printf "Enter variant: "; read variant
The user enters the variant and that value is used in the python script. However, I am not sure how to save that value inputed as a text file in a specific directory (C:\Users\cmccabe\Desktop\Python27\).
2. Not sure how save the text file like this "(NM_004004.4:user input value)"
3. I am hoping a python command can be used in the menu
4. Does the code look correct? Thank you .
Code:
Code:
#!/bin/bash
menu() {
printf "\n Welcome to annovar, please make a selection from the MENU \n
==================================\n\n
\t 1 GJB2 analysis\n
\t 2 MECP2 analysis\n
\t 3 Phox2B analysis\n
\t 4 Exit\n\n
==================================\n\n"
printf "\t Your choice: "; read menu_choice
case "$menu_choice" in
1) gjb2 ;;
2) mecp2 ;;
3) phox2b ;;
4) printf "\n Bye! \n\n"; exit ;;
*) printf "\n Invalid choice."; sleep 2; menu ;;
esac
}
gjb2() {
printf "\n\n"
printf "What is the id of the patient getting GJB2 analysis : "; read id
printf "Enter variant: "; read variant
[ -z "$id" ] && printf "\n No ID supplied. Leaving match function." && sleep 2 && menu
[ "$id" = "end" ] && printf "\n Leaving match function." && sleep 2 && menu
cd 'C:'
C:\Users\cmccabe\Desktop\Python27\python.exe C:\Users\cmccabe\Desktop\Python27\run_batch_job.py C:\Users\cmccabe\Desktop\Python27\${variant}.txt
C:\Users\cmccabe\Desktop\annovar\${id}.txt PositionConverter
parse
}
hello
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File1.txt
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Hi Guys,
I have blank file A.txt
I will run the script xyz.sh
First i want to open a.txt file...
Now i will enter some data like
XYZ
ABC
PQR
..
Save it and keep continue my script....
END of my script.
Thanks (1 Reply)
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once I run the script,
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this is part of my code and I dunno where I am doing it wrong
do
{
for( int i = 0; i < l; ++i )
{
std::cout << 1 + k * i + index << ' ';
}
... (2 Replies)
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2.txt
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Discussion started by: cmccabe
4 Replies
LEARN ABOUT DEBIAN
explain_printf_or_die
explain_printf_or_die(3) Library Functions Manual explain_printf_or_die(3)NAME
explain_printf_or_die - formatted output conversion and report errors
SYNOPSIS
#include <libexplain/printf.h>
int explain_printf_or_die(const char *format);
int explain_printf_on_error(const char *format);
DESCRIPTION
The explain_printf_or_die function is used to call the printf(3) system call. On failure an explanation will be printed to stderr, obtained
from the explain_printf(3) function, and then the process terminates by calling exit(EXIT_FAILURE).
The explain_printf_on_error function is used to call the printf(3) system call. On failure an explanation will be printed to stderr,
obtained from the explain_printf(3) function, but still returns to the caller.
format The format, exactly as to be passed to the printf(3) system call.
RETURN VALUE
The explain_printf_or_die function only returns on success, see printf(3) for more information. On failure, prints an explanation and
exits, it does not return.
The explain_printf_on_error function always returns the value return by the wrapped printf(3) system call.
EXAMPLE
The explain_printf_or_die function is intended to be used in a fashion similar to the following example:
int result = explain_printf_or_die(format);
SEE ALSO printf(3)
formatted output conversion
explain_printf(3)
explain printf(3) errors
exit(2) terminate the calling process
COPYRIGHT
libexplain version 0.52
Copyright (C) 2010 Peter Miller
explain_printf_or_die(3)
03-09-2015
.