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Shell Programming and Scripting
Match first two columns and average third from multiple files
Post 302937424 by Scrutinizer on Thursday 5th of March 2015 11:50:37 AM
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1. Shell Programming and Scripting
Hi,
I got a lot of files looking like this:
1
0.5
6
All together there are ard 1'000'000 lines in each of the ard 100 files.
I want to build the average for every line, and write the result to a new file.
The averaging should start at a specific line, here for example at line... (10 Replies)
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Hi,
first, I have searched in the forum for this, but I could not find the right answer. (There were some similar threads, but I was not sure how to adapt the ideas.)
Anyway, I have a quite natural problem: Given are several text files. All files contain the same number of lines and the same... (3 Replies)
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Hi,
Input
7488 7389 chr1.fa chr1.fa
3546 9887 chr5.fa chr9.fa
7387 7898 chrX.fa chr3.fa
7488 7389 chr21.fa chr3.fa
7488 7389 chr1.fa chr1.fa
3546 9887 chr9.fa chr5.fa
7898 7387 chrX.fa chr3.fa
Desired Output
7488 7389 chr1.fa chr1.fa 2
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I have several sequential files with name stat.1000, stat.1001....to stat.1020 with a format like this
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0.01 3822 1 4.97379915032e-14 4.96982253992e-09 0
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I would like to join two files when two columns in each file matches with each other and then produce an output when taking multiple columns.
Like I have file A
1234,ABCD,23,JOHN,NJ,USA
2345,ABCD,24,SAM,NY,USA
5678,GHIJ,24,TOM,NY,USA
5678,WXYZ,27,MAT,NJ,USA
and file B
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Hi experts,
I want to group by average, for multiple columns starting column $7 until NF,
group by ($1-$5), please help
For just 7th column, I can do
awk '
NR>1{
arr += $7
count += 1
}
END{
for (a in arr) {
print a, arr/count
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7. Shell Programming and Scripting
I have the need to match the first two columns and when they match, calculate the percent of average for the third columns. The following awk script does not give me the expected results.
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Hi forum members,
I'm trying to get an average of multiple columns in a csv file using awk. A small example of my input data is as follows:
cu,u3o8,au,ag
-9,20,-9,3.6
0.005,30,-9,-9
0.005,50,10,3.44
0.021,-9,8,3.35
The following code seems to do most of what I want
gawk -F","... (6 Replies)
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9. Shell Programming and Scripting
hello, I have three files in the following order
==> File1 <==
1 20977000 20977000 A C 1.00 0,15 15 45
1 115829313 115829313 G A 0.500 6,7 13 99
==> File2 <==
1 20977000 20977000 A C 1.00 0,13 13 39
1 115829313 ... (5 Replies)
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Hi,
i have 2 files , the data i need to match is in masterfile and i need to pull out column 3 from master if column 1 and 2 match and output entire row to new file
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LEARN ABOUT HPUX
cdbs-edit-patch
CDBS-EDIT-PATCH(1) CDBS Documentation CDBS-EDIT-PATCH(1) NAME
cdbs-edit-patch - create or edit a CDBS simple-patchsys.mk patch SYNOPSIS
cdbs-edit-patch patchname DESCRIPTION
cdbs-edit-patch creates or edits patches for use by the CDBS simple-patchsys.mk patch system. For more information about CDBS please see the documentation under /usr/share/doc/cdbs/. When patchname exists, cdbs-edit-patch will set up a temporary working source tree, apply all patches up to and including patchname in lex- icographic order, and spawn an interactive shell for the developer. The developer can then edit files in this working tree. When the developer is done and exits the shell, cdbs-edit-patch updates patchname to reflect the changes made. To abort the process from the inter- active shell, exit with a nonzero exit value. When patchname does not exist, cdbs-edit-patch will assume that a new patch should be created. As with the above scenario, cdbs-edit-patch will first create a temporary working source tree and apply all patches up to the new patch in lexicographic order. When the shell is quit, cdbs-edit-patch will create patchname. AUTHOR
CDBS was written by Colin Walters and others. cdbs-edit-patch was written by Martin Pitt. This manual page was written by Peter Eisen- traut based on the dpatch-edit-patch(1) manual page. SEE ALSO
CDBS documentation in /usr/share/doc/cdbs/, /usr/share/cdbs/1/rules/simple-patchsys.mk, dpatch-edit-patch(1), quilt(1) Debian 5 Feb 2006 CDBS-EDIT-PATCH(1)