02-27-2015
Done that, it says: tr: extra operand `feedgen.sh`
only one string may be given when deleting without squeezing repeats.
Result is empty feedgen1.sh file
10 More Discussions You Might Find Interesting
1. UNIX for Dummies Questions & Answers
Hello,
I am a newbie who is attempting to write a script to monitor a directory for a set of 3 files that I am expecting to get ftp'd. Occasionally, we suspend operations for maintenance etc. but we still get the files so there can be more than 1 set. If there is more than 1 set, I would like... (2 Replies)
Discussion started by: cmf00186
2 Replies
2. Shell Programming and Scripting
What is the best way for a script to run to monitor a directory for the presence of files and then perform a function afterwords? I was hoping to have it continually run and sleep until it detects that files are present in the directory, then break out of the loop and go on to the next step.
... (17 Replies)
Discussion started by: nulinux
17 Replies
3. Shell Programming and Scripting
Hi All,
We are having important config files in an directory which was accessable by all
/auto/config/Testbed/>ls
config1.intial
config2.intial
config3.inital
often we find that some of the lines are missing in config files, we doubt if some one is removing.
I would like to write... (0 Replies)
Discussion started by: shellscripter
0 Replies
4. Shell Programming and Scripting
Hi,
Im trying to write this script but im stuck on it, basicaly what i want to do is to write a code to verify a log file ( apache log file for example ) and for each new line with specific data , then, output this new line for another file:
full ex:
output of the server.log is (... (4 Replies)
Discussion started by: Thales.Claro
4 Replies
5. Shell Programming and Scripting
Hello dear Community,
I have a task to wrtie a script which will gzip not zipped files in a directory and itīs subdirectories. I succeeded in gzippung the directory but not the subdirectories:
#/bin/bash
#go to the directory where to zip
cd $1
#Zip unzipped files
for i in `ls | xargs... (2 Replies)
Discussion started by: JamesCarter
2 Replies
6. Shell Programming and Scripting
hello,
i`m new in bash scripting and i getting an error with my little server monitoring script
example of my script:
#!/bin/sh
s1_ats=0
while ; do
sleep 5
s1=`ping -c 1 xxxx.xxxx.xxxx.xxxx | grep 64 | awk '{print $1}'`
if ; then
$s1_ats=0
else
if ; then (2 Replies)
Discussion started by: grauzikas
2 Replies
7. Shell Programming and Scripting
I'd like to create simple bash script that, given a directory, compresses each directory by name, e.g.:
Contents of ~/Documents
Folder1
Folder2
Folder3
compress-subdirectoies.sh ~/Documents
Results:
Folder1.
Folder2.
Folder2.
Any advice would be appreciated (7 Replies)
Discussion started by: furashgf
7 Replies
8. Shell Programming and Scripting
Hi,
i am new to shell scripts, i need to write a script that can monitor size of directory of specific users. Please help.
Thanks,
Nitin (2 Replies)
Discussion started by: nicksrulz
2 Replies
9. Shell Programming and Scripting
#!/bin/bash
#
name=$1
type=$2
number=1
for file in ./**
do
if
then
filenumber=00$number
elif
then
filenumber=0$number
fi
tempname="$name""$filenumber"."$type"
if (4 Replies)
Discussion started by: TheGreatGizmo
4 Replies
10. Shell Programming and Scripting
I have a bash that downloads a list and if that list has data in it then a new main directory is created (with the date) with several subdirectories (example1, example2, example3). My question is in that list there are portion of specific file types (.vcf.gz) - identifier towards the end that have... (0 Replies)
Discussion started by: cmccabe
0 Replies
LEARN ABOUT DEBIAN
bio::search::result::wabaresult
Bio::Search::Result::WABAResult(3pm) User Contributed Perl Documentation Bio::Search::Result::WABAResult(3pm)
NAME
Bio::Search::Result::WABAResult - Result object for WABA alignment output
SYNOPSIS
# use this object exactly as you would a GenericResult # the only extra method is query_database which is the # name of the file where the
query sequence came from
DESCRIPTION
This object is for WABA result output, there is little difference between this object and a GenericResult save the addition of one method
query_database. Expect many of the fields for GenericResult to be empty however as WABA was not intended to provide a lot of extra
information other than the alignment.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Jason Stajich
Email jason@bioperl.org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::Search::Result::WABAResult->new();
Function: Builds a new Bio::Search::Result::WABAResult object
Returns : Bio::Search::Result::WABAResult
Args : -query_database => "name of the database where the query came from"
query_database
Title : query_database
Usage : $obj->query_database($newval)
Function: Data field for the database filename where the
query sequence came from
Returns : value of query_database
Args : newvalue (optional)
All other methods are inherited from Bio::Search::Result::GenericResult
See the Bio::Search::Result::GenericResult for complete documentation of the rest of the methods that are available for this module.
perl v5.14.2 2012-03-02 Bio::Search::Result::WABAResult(3pm)