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Top Forums Shell Programming and Scripting Pattern match with awk/sed - help Post 302936226 by RudiC on Tuesday 24th of February 2015 03:56:52 AM
Old 02-24-2015
Try (making use of your footnote hint):
Code:
sed 's/\[[^][]*\]([0-9]\{1,3\})//' file3
ref|XP_002371341.1| oxoacyl-ACP reductase, putative [Toxoplasma gondii ME49] gb|EPT24759.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Toxoplasma gondii ME49] gb|ESS34081.1| 3-ketoacyl-(acyl-carrier-protein) reductase     -    243    134    61.4617940199336    1    230    2e-71    80.7308970099668
gb|EPR63881.1| 3-ketoacyl-(acyl-carrier-protein) reductase     -    243    134    61.4617940199336    1    230    2e-71    80.7308970099668
ref|XP_003885852.1| 3-ketoacyl-(Acyl-carrier-protein) reductase, related [Neospora caninum Liverpool] emb|CBZ55826.1| 3-ketoacyl-(Acyl-carrier-protein) reductase, related     -    242    137    61.7940199335548    1    229    8e-71    80.3986710963455
emb|CDJ42835.1| oxoacyl-ACP reductase, putative     -    240    141    61.7940199335548    1    211    3e-64    79.734219269103
emb|CDJ64722.1| oxoacyl-ACP reductase, putative

 

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WILDMAT(3)						     Library Functions Manual							WILDMAT(3)

NAME
wildmat - perform shell-style wildcard matching SYNOPSIS
int wildmat(text, pattern) char *text; char *pattern; DESCRIPTION
Wildmat is part of libinn (3). Wildmat compares the text against the pattern and returns non-zero if the pattern matches the text. The pattern is interpreted according to rules similar to shell filename wildcards, and not as a full regular expression such as those handled by the grep(1) family of programs or the regex(3) or regexp(3) set of routines. The pattern is interpreted as follows: x Turns off the special meaning of x and matches it directly; this is used mostly before a question mark or asterisk, and is not spe- cial inside square brackets. ? Matches any single character. * Matches any sequence of zero or more characters. [x...y] Matches any single character specified by the set x...y. A minus sign may be used to indicate a range of characters. That is, [0-5abc] is a shorthand for [012345abc]. More than one range may appear inside a character set; [0-9a-zA-Z._] matches almost all of the legal characters for a host name. The close bracket, ], may be used if it is the first character in the set. The minus sign, -, may be used if it is either the first or last character in the set. [^x...y] This matches any character not in the set x...y, which is interpreted as described above. For example, [^]-] matches any character other than a close bracket or minus sign. HISTORY
Written by Rich $alz <rsalz@uunet.uu.net> in 1986, and posted to Usenet several times since then, most notably in comp.sources.misc in March, 1991. Lars Mathiesen <thorinn@diku.dk> enhanced the multi-asterisk failure mode in early 1991. Rich and Lars increased the efficiency of star patterns and reposted it to comp.sources.misc in April, 1991. Robert Elz <kre@munnari.oz.au> added minus sign and close bracket handling in June, 1991. This is revision 1.10, dated 1992/04/03. SEE ALSO
grep(1), regex(3), regexp(3). WILDMAT(3)
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