mk_phantom_3d(1)				       The Computational Morphometry Toolkit					  mk_phantom_3d(1)

NAME

       mk_phantom_3d - Generate phantom image

SYNOPSIS

       mk_phantom_3d [options] command0 [command1 ...]	      sphere x,y,z radius value       box x0,y0,z0 x1,y1,z1 value

DESCRIPTION

       Generate 3D digital phantom images using a selection of drawing commands

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
	    Write list of basic command line options to standard output.

       --help-all
	    Write complete list of basic and advanced command line options to standard output.

       --wiki
	    Write list of command line options to standard output in MediaWiki markup.

       --man
	    Write man page source in 'nroff' markup to standard output.

       --version
	    Write toolkit version to standard output.

       --echo
	    Write the current command line to standard output.

       --verbose-level <integer>
	    Set verbosity level.

       --verbose, -v
	    Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
	    Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --dims <string>, -D <string>
	    Set dimensions in voxels

       --voxel <string>, -V <string>
	    Set voxel size in [mm]

       --coordinates
	    Coordinate specification mode.  Supported values: "indexed", "absolute", "relative", where the default is "indexed", or use one of the
	    following:

	    --indexed
		 Use grid indexes to specify coordinates. For each dimension, the valid value range is [0,Dims-1].  [This is the default]

	    --absolute
		 Use absolute volume coordinates. For each dimension, the valid range is [0,FOV].

	    --relative
		 Use relative volume coordinates. For each dimension, the valid range is [0,1].

       --char, -c
	    8 bits, signed

       --byte, -b
	    8 bits, unsigned

       --short, -s
	    16 bits, signed

       --ushort, -u
	    16 bits, unsigned [This is the default]

       --int, -i
	    32 bits signed

       --float, -f
	    32 bits floating point

       --double, -d
	    64 bits floating point

       --bg <double>, -B <double>
	    Set the image background value (use to initialize newly created image).  [Default: 0]

       --import <string>, -I <string>
	    Import image [Default: NONE]

       --import-grid <string>
	    Import image grid only, ignore data [Default: disabled]

       --outfile <string>, -o <string>
	    File name for output image [Default: phantom.nii ]

AUTHORS

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, and Daniel B. Russakoff

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       From April 2009 through September 2011, CMTK Development and Maintenance was supported by the National Institute of Biomedical Imaging  and
       Bioengineering under Grant No.R01 EB008381 (PI: Torsten Rohlfing).

CMTK 2.2.2							    Jul 20 2012 						  mk_phantom_3d(1)