In lieu of relying on the correct sequence of filenames in the control file, using file numbering might be more reliable (an assumption that is not true looking at the control file in post#1). Try
Hello Everyone,
Here is what I am trying to do. I have four text files, I want to gzip them under unix and mail the zipped file via outlook. I am able to do this easily enough, but using winzip or pkunzip to unzip the file, there is only one file. (In essence, all four files were... (2 Replies)
Hi all,
I am a newbie in writng unix..I am using ksh shell..Does anyone know how to copy a list o files from directory A to directory B with differnt names? i.e
in Dir A, I have
RPT101.555.TXT
RPT102.666.TXT
and I want to copy those files to dir B with new naming convention..
in Dir B,... (7 Replies)
I have few webservers logs like access.log. which would be growing everyday.
what i do everyday is, take the backup of access.log as access.log_(currentdate) and nullify the access.log.
So thought of writing a script... but stuck up in middle.
My requirement: to take the backup and nullify... (6 Replies)
hello, I need to build a shell script that receives the folder to copy by parameter and copy all files except thumb.db to another folder and rename them like, file.jpg renamed to file_bb1.jpg.
can someone help me
Thanks (4 Replies)
hello,
I am write a Script and i would listing all Files from Path1 out with DSR*.txt and give a new name an copy to the Path2.
I have problems with that to rename. Someone can help me?
Sorry, for my english. My english is not gut.
I hope you understand my.
That is my Script.
... (2 Replies)
Hi All,
I am new to scripting and am looking for some assistance setting up a script. Basically I need the script to scan a folder for the newest files and make a copy of those files, adding a month to the date stamp. I also need this script to delete the previously copied files to save space.... (4 Replies)
Hi,
I require help to complete below requirement through Linux Script.
I have a SQL query which shows two columns as output. One is Report Name and other is report path. Query return multiple rows. below is the output.
Report Name
Cotton Stock Report (Net Weight)- Customized
Output... (3 Replies)
#!/bin/sh
sqlplus -s "/ as sysdba" << EOF
SET HEADING OFF
SET FEEDBACK OFF
Select
pt.user_concurrent_program_name , OUTFILE_NAME
FROm
apps.fnd_concurrent_programs_tl pt,
apps.fnd_concurrent_requests f
where
pt.concurrent_program_id = f.concurrent_program_id
and pt.application_id =... (1 Reply)
Good afternoon friends.
I wanted to make a query, how to compress several files and leave them all in 1, for example
flat text files:
filename_1.csv
filename_2.csv
filename_3.csv
expected result
filename_end.gzip = (filename_1.csv
filename_2.csv
filename_3.csv)
please (2 Replies)
Discussion started by: tricampeon81
2 Replies
LEARN ABOUT DEBIAN
proftmb
PROFTMB(1) User Commands PROFTMB(1)NAME
proftmb - per-residue prediction of bacterial transmembrane beta barrels
SYNOPSIS
proftmb [options]
DESCRIPTION
proftmb predicts bacterial transmembrane beta barrels from sequence using profile fed Hidden Markov Models (HMM).
Output format
Self-annotating. Letters of prediction: 'i' - inside cytoplasm, 'O' - outside cytoplasm, 'U' - up (on chain moving out of cytoplasm), 'D'
- down (on chain moving into cytoplasm).
References
Bigelow, H. and Rost, B. (2006). PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins. Nucleic Acids Res,
34(Web Server issue), W186-8.
To invoke the menu, type:
proftmb --menu
The options are:
-d, --directory-root <STRING>
root path where files (options -s,-r,-l,-a,-e,-t,-u,-z,-n) reside
-a, --reduction-state-decode <STRING>
state reduction for decoding
-b, --reduction-state-report <STRING>
state reduction for reporting
-m, --membrane-strand-states <STRING>
list of membrane strand states
-z, --z-curve-file
<STRING> file containing means and sd's at integral length values
-x, --z-calibration-curve <STRING>
file mapping coverage and accuracy values to z-scores
-n, --null-frequency <STRING>
background frequency file
-c, --minimum-score-cutoff <DOUBLE>
minimum z-score for per-residue prediction
-o, --outfile-prefix <STRING>
output file prefix for the three files generated: PREFIX_dat.txt, PREFIX_proftmb_pretty.txt PREFIX_proftmb_tabular.txt
-s, --static-model-data <STRING>
data representing the model architecture
-t, --trained-params <STRING>
params representing the encoded training data
-q, --test-blastQ-file-or-dir <STRING>
psiblast profile (-Q) or directory (full pathname or relative to current directory) with many profiles
-w, --single-sequence-name <STRING>
if -q option points to a single file, this is the name
-v, --list-blastQ-files <STRING>
list of psiblast files to process in directory (leave blank to process all files)
--outfile-pretty <STRING>
pretty output file (overrides automatic name PREFIX_proftmb_pretty.txt)
--outfile-tab
<STRING> tabulated output file (overrides automatic name PREFIX_proftmb_tabular.txt)
--outfile-dat
<STRING> data output file (overrides automatic name PREFIX_dat.txt)
--version
<BOOL> output version information and exit
--quiet
<BOOL> be quiet
EXAMPLES
proftmb @/usr/share/proftmb/options -q /usr/share/doc/proftmb/examples/example.Q -o /tmp/example
The above produces 3 output files: /tmp/example_proftmb_tabular.txt, /tmp/example_proftmb_pretty.txt and /tmp/example_dat.txt. Compare
these to the examples in /usr/share/doc/proftmb/examples.
BUGS
Please report bugs at <https://rostlab.org/bugzilla3/enter_bug.cgi?product=proftmb>.
COPYRIGHT
Copyright (C) 2004 Henry Bigelow
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This package is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MER-
CHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.
proftmb 1.1.10 February 2012 PROFTMB(1)