Grep Problem Post: 302932513

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Top Forums UNIX for Dummies Questions & Answers Grep Problem Post 302932513 by kleinstadt on Thursday 22nd of January 2015 04:59:58 AM

01-22-2015

Registered User

Dear all,
thanks again for your kindly help!
Attached you can find the files which i am using at the moment.
The lociid file (=file1) was generated with the following steps:

Code:

cut -f1 table > loci
sort loci > loci_sorted
uniq loci_sorted > lociids

For uploading the files i had to "rename" them:

Code:

mv lociids lociids.txt
mv table table.txt

Here is the output of the

Code:

 head lociids.txt | od -bc

requested by Don Cragun

Code:

0000000 143 157 155 160 061 060 060 064 065 137 143 060 137 163 145 161
          c   o   m   p   1   0   0   4   5   _   c   0   _   s   e   q
0000020 061 012 143 157 155 160 061 060 060 071 061 137 143 060 137 163
          1  \n   c   o   m   p   1   0   0   9   1   _   c   0   _   s
0000040 145 161 061 012 143 157 155 160 061 060 061 061 070 137 143 060
          e   q   1  \n   c   o   m   p   1   0   1   1   8   _   c   0
0000060 137 163 145 161 061 012 143 157 155 160 061 060 061 065 061 137
          _   s   e   q   1  \n   c   o   m   p   1   0   1   5   1   _
0000100 143 060 137 163 145 161 061 012 143 157 155 160 061 060 061 065
          c   0   _   s   e   q   1  \n   c   o   m   p   1   0   1   5
0000120 061 137 143 060 137 163 145 161 062 012 143 157 155 160 061 060
          1   _   c   0   _   s   e   q   2  \n   c   o   m   p   1   0
0000140 061 065 071 137 143 060 137 163 145 161 061 012 143 157 155 160
          1   5   9   _   c   0   _   s   e   q   1  \n   c   o   m   p
0000160 061 060 061 071 070 137 143 060 137 163 145 161 061 012 143 157
          1   0   1   9   8   _   c   0   _   s   e   q   1  \n   c   o
0000200 155 160 061 060 062 060 064 137 143 060 137 163 145 161 061 012
          m   p   1   0   2   0   4   _   c   0   _   s   e   q   1  \n
0000220 143 157 155 160 061 060 062 060 064 137 143 060 137 163 145 161
          c   o   m   p   1   0   2   0   4   _   c   0   _   s   e   q
0000240 062 012 143 157 155 160 061 060 062 062 061 137 143 060 137 163
          2  \n   c   o   m   p   1   0   2   2   1   _   c   0   _   s
0000260 145 161 062 012
          e   q   2  \n
0000264

lociids.txt (76.8 KB)

table.txt (447.5 KB)

kleinstadt

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LEARN ABOUT BSD

zgrep

ZGREP(1)						      General Commands Manual							  ZGREP(1)

NAME

       zgrep - search possibly compressed files for a regular expression

SYNOPSIS

       zgrep [ grep_options ] [ -e ] pattern filename...

DESCRIPTION

       Zgrep  invokes  grep  on  compressed  or  gzipped  files.   These  grep	options  will  cause  zgrep  to  terminate  with  an  error  code:
       (-[drRzZ]|--di*|--exc*|--inc*|--rec*|--nu*).  All other options specified are passed directly to grep.  If no file is specified,  then  the
       standard input is decompressed if necessary and fed to grep.  Otherwise the given files are uncompressed if necessary and fed to grep.

       If the GREP environment variable is set, zgrep uses it as the grep program to be invoked.

EXIT CODE

       2 - An option that is not supported was specified.

AUTHOR

       Charles Levert (charles@comm.polymtl.ca)

SEE ALSO

       grep(1), gzexe(1), gzip(1), zdiff(1), zforce(1), zmore(1), znew(1)

																	  ZGREP(1)

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zgrep