Hi there,
I'm trying to merge two files and make a third file.
However, two of the columns need to match exactly in both files AND I want everything from both files in the output if the two columns match in that row.
First file looks like this:
chr1 10001980 T A
Second... (12 Replies)
I have this text file with a very large number of columns (10,000+) and I want to move the first column to the position of the six column so that the text file looks like this:
Before cutting and pasting
ID Family Mother Father Trait Phenotype
aaa bbb ... (5 Replies)
Hi,
I have a tab delimited text file with multiple columns. The second and third columns include numbers that have not been sorted. I want to extract rows where the second column includes a value between -0.01 and 0.01 (including both numbers) and the first third column includes a value between... (1 Reply)
Hi,
I am not so familiar with bash scripting and would appreciate your help here.
I have a text file 'input.txt' like this:
2 3 4
5 6 7
8 9 10
I want to store each column in an array like this
a ={2 5 8}, b={3 6 9}, c={4 7 10}
so that i can access any element, e.g b=6 for the later use. (1 Reply)
Hi to all,
I have two files. File1 has no header, two columns:
sample1 A
sample2 B
sample3 B
sample4 C
sample5 A
sample6 D
sample7 D
File2 has a header, except for the first 3 columns (chr,start,end). "sample1" is the header for the 4th ,5th ,6th columns, "sample2" is the header... (4 Replies)
Hi Friends,
I have files with columns like this. This sample input below is partial.
Please check below for main file link. Each file will have only two rows.
... (8 Replies)
I have this code below that only prints out certain columns from the first two rows (doesn't affect rows 3 and beyond). How can I do the same on a partial header pattern “G_TP” instead of having to know specific column numbers (e.g. 374-479)? I've tried many other commands within this pipe with no... (4 Replies)
Hello,
I have to fish out some specific columns from a file based on the header value. I have the list of columns I need in a different file. I thought I could read in the list of headers I need,
# file with header names of required columns in required order
headers_file=$2
# read contents... (11 Replies)
I've been struggling with this one for quite a while and cannot seem to find a solution for this find/replace scenario. Perhaps I'm getting rusty.
I have a file that contains a number of metrics (exactly 3 fields per line) from a few appliances that are collected in parallel. To identify the... (3 Replies)
Discussion started by: verdepollo
3 Replies
LEARN ABOUT OPENSOLARIS
fspec
fspec(4) File Formats fspec(4)NAME
fspec - format specification in text files
DESCRIPTION
It is sometimes convenient to maintain text files on the system with non-standard tabs, (tabs that are not set at every eighth column).
Such files must generally be converted to a standard format, frequently by replacing all tabs with the appropriate number of spaces, before
they can be processed by system commands. A format specification occurring in the first line of a text file specifies how tabs are to be
expanded in the remainder of the file.
A format specification consists of a sequence of parameters separated by blanks and surrounded by the brackets <: and :>. Each parameter
consists of a keyletter, possibly followed immediately by a value. The following parameters are recognized:
ttabs The t parameter specifies the tab settings for the file. The value of tabs must be one of the following:
o A list of column numbers separated by commas, indicating tabs set at the specified columns.
o A '-' followed immediately by an integer n, indicating tabs at intervals of n columns.
o A '-' followed by the name of a ``canned'' tab specification.
Standard tabs are specified by t-8, or equivalently, t1,9,17,25, etc. The canned tabs that are recognized are defined by the
tabs(1) command.
ssize The s parameter specifies a maximum line size. The value of size must be an integer. Size checking is performed after tabs have
been expanded, but before the margin is prepended.
mmargin The m parameter specifies a number of spaces to be prepended to each line. The value of margin must be an integer.
d The d parameter takes no value. Its presence indicates that the line containing the format specification is to be deleted from
the converted file.
e The e parameter takes no value. Its presence indicates that the current format is to prevail only until another format specifi-
cation is encountered in the file.
Default values, which are assumed for parameters not supplied, are t-8 and m0. If the s parameter is not specified, no size checking is
performed. If the first line of a file does not contain a format specification, the above defaults are assumed for the entire file. The
following is an example of a line containing a format specification:
* <:t5,10,15 s72:> *
If a format specification can be disguised as a comment, it is not necessary to code the d parameter.
SEE ALSO ed(1), newform(1), tabs(1)SunOS 5.11 3 Jul 1990 fspec(4)