Hi,
I have a file named status.txt that looks like the file below. What I want to do is to delete the part <status> and </status> and just leave the number and print each number per line. How can I do it? If I will use sed or awk how can I do it? I tried with sed but it didn't work. Maybe I... (8 Replies)
i have 200000bytes size of a unix file i need to delete some text between two strings recursively using a loop with sed or awk . these two strings are : 1st string getting from a file :::2 nd string is fi...its constant . can anyone help me sed -n'/<1 st string >/,/fi/' <input_filename> is the... (2 Replies)
HI,
if a String is present in file1.txt, i want to delete that String from file2.txt.
How can i do this??
I am sure that the file1.txt is a subset of file2.txt. (2 Replies)
Hello guys,
should be a very easy questn for you:
I need to delete strings in file1 based on the list of strings in file2.
like file2:
word1_word2_
word3_word5_
word3_word4_
word6_word7_
file1:
word1_word2_otherwords..,word3_word5_others... (7 Replies)
Been searching for about 3 hours for similar functionality that I can get examples of how to output text from variables into certain locations in a file. I would like to incorporate this into a script. I have not been able to find a command example that does it all in one method. I find part of... (1 Reply)
The question is not as simple as the title... I have a file, it looks like this
<string name="string1">RZ-LED</string>
<string name="string2">2.0</string>
<string name="string2">Version 2.0</string>
<string name="string3">BP</string>
I would like to check for duplicate entries of... (11 Replies)
Hello All,
this is my first post so I don't know if I am doing this right.
I would like to append entries from a series of strings (contained in a text file) consecutively at the end of specifically labeled lines in another file.
As an example:
- the file that contains the values to be... (3 Replies)
hi, i have a big file like this:
>s31 length=12 numreads=6 gene=isotig454 status=igo
ldfddfdfdfdkkkkkkfdfdkkkksdfdkkkkkkkkkksdfd
dfdfdfldfdkdffdlfddflfdjkkkkkkfdgkkgfhghfgkkk
ldfddfdfdfdkkkkkkfdfdkkkksdfdkkkkkkkkkksdfd
dfdfdfldfdkdffdlfddflfdjkkkkkkfdgkkgfhghfgkkk
>c2 length =344... (4 Replies)
I will appreciate if you help me here in this script in Solaris Enviroment.
Scenario:
i have 2 files :
1) /tmp/TRANSACTIONS_DAILY_20180730.txt:
201807300000000004
201807300000000005
201807300000000006
201807300000000007
201807300000000008
2)... (10 Replies)
Discussion started by: teokon90
10 Replies
LEARN ABOUT DEBIAN
fastautils
fastautils(1) FASTA format file manipulation utilities fastautils(1)NAME
fastautils - FASTA format file manipulation utilities
SYNOPSIS
fastachecksum [ options ] <input file>
fastaclean
fastaclip
fastacomposition
fastadiff
fastaexplode
fastafetch
fastahardmask
fastaindex
fastalength
fastanrdb
fastaoverlap
fastareformat
fastaremove
fastarevcomp
fastasoftmask
fastasort
fastasplit
fastasubseq
fastatranslate
fastavalidcds
DESCRIPTION
These are utilities for the manipulation of FASTA format sequence databases which are distributed with the exonerate sequence alignment
program.
ENVIRONMENT
Not documented yet.
EXAMPLES
fastalength sequence.fasta
blah blah
VERSION
This documentation accompanies version 2.2.0 of the exonerate package.
AUTHOR
Guy St.C. Slater. <guy@ebi.ac.uk>. See the AUTHORS file accompanying the source code for a list of contributors.
AVAILABILITY
This source code for the exonerate package is available under the terms of the GNU general public licence.
Please see the file COPYING which was distrubuted with this package, or http://www.gnu.org/licenses/gpl.txt for details.
This package has been developed as part of the ensembl project. Please see http://www.ensembl.org/ for more information.
SEE ALSO exonerate(1),e-PCR
fastautils March 2003 fastautils(1)