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Full Discussion: Match patterns from another file and tag
Top Forums UNIX for Dummies Questions & Answers Match patterns from another file and tag Post 302930529 by senhia83 on Monday 5th of January 2015 09:55:18 AM
Old 01-05-2015
Match patterns from another file and tag
Hi all,

I have a file , which has 6 tab delimited fields, with $3 and $4 subfielded with spaces. I wamt to match cols $2,$3,$4 of tmp1 with tmp2, ..and then flag the 5th col if found.

tmp1
Code:
1756    Xerm    XermA XermB XermC XermD AA TT AA GG     A       1
1763    Xerm    XermA XermB XermC XermD AA TT AA GG     A       1
18078   Xerm    XermA XermB XermC XermD AA TT AA GG     A       1
18115   Xerm    XermA XermB XermC XermD GG AA AA GG     B       2
18251   Xerm    XermA XermB XermC XermD GG AA AA GG     B       2
19352-005       Xerm    XermA XermB XermC XermD AA TT AA GG     A       1
19352-006       Xerm    XermA XermB XermC XermD AA TT AA GG     A       1
195A    Xerm    XermA XermB XermC XermD AA TT AA GG     A       1
A02     Xerm    XermA XermB XermC XermD GG TT GG GG     C       3
A04     Xerm    XermA XermB XermC XermD GG TT AA GG     D       4

tmp2

Code:
Xerm    XermA XermB XermC XermD AA TT AA GG



Expected output

Code:
1756    Xerm    XermA XermB XermC XermD AA TT AA GG     *A*       1
1763    Xerm    XermA XermB XermC XermD AA TT AA GG     *A*       1
18078   Xerm    XermA XermB XermC XermD AA TT AA GG     *A*       1
18115   Xerm    XermA XermB XermC XermD GG AA AA GG     B       2
18251   Xerm    XermA XermB XermC XermD GG AA AA GG     B       2
19352-005       Xerm    XermA XermB XermC XermD AA TT AA GG     *A*       1
19352-006       Xerm    XermA XermB XermC XermD AA TT AA GG     *A*      1
195A    Xerm    XermA XermB XermC XermD AA TT AA GG     *A*       1
A02     Xerm    XermA XermB XermC XermD GG TT GG GG     C       3
A04     Xerm    XermA XermB XermC XermD GG TT AA GG     D       4


Here is what I tried, not producing desired output

Code:
awk -F'\t' 'NR==FNR{a[$0]=$0;next} $2"\t"$3"\t"$4 in a {$5="*"$5"*"}1' OFS="\t"  tmp2 tmp1

 

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LEARN ABOUT MOJAVE

locale::codes::langvar

Locale::Codes::LangVar(3pm)				 Perl Programmers Reference Guide			       Locale::Codes::LangVar(3pm)

NAME

       Locale::Codes::LangVar - standard codes for language variation identification

SYNOPSIS

	  use Locale::Codes::LangVar;

	  $lvar = code2langvar('acm');		       # $lvar gets 'Mesopotamian Arabic'
	  $code = langvar2code('Mesopotamian Arabic'); # $code gets 'acm'

	  @codes   = all_langvar_codes();
	  @names   = all_langvar_names();

DESCRIPTION

       The "Locale::Codes::LangVar" module provides access to standard codes used for identifying language variations, such as those as defined in
       the IANA language registry.

       Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default IANA language
       registry codes will be used.

SUPPORTED CODE SETS

       There are several different code sets you can use for identifying language variations. A code set may be specified using either a name, or
       a constant that is automatically exported by this module.

       For example, the two are equivalent:

	  $lvar = code2langvar('en','alpha-2');
	  $lvar = code2langvar('en',LOCALE_CODE_ALPHA_2);

       The codesets currently supported are:

       alpha
	   This is the set of alphanumeric codes from the IANA language registry, such as 'arevela' for Eastern Armenian.

	   This code set is identified with the symbol "LOCALE_LANGVAR_ALPHA".

	   This is the default code set.

ROUTINES

       code2langvar ( CODE [,CODESET] )
       langvar2code ( NAME [,CODESET] )
       langvar_code2code ( CODE ,CODESET ,CODESET2 )
       all_langvar_codes ( [CODESET] )
       all_langvar_names ( [CODESET] )
       Locale::Codes::LangVar::rename_langvar  ( CODE ,NEW_NAME [,CODESET] )
       Locale::Codes::LangVar::add_langvar  ( CODE ,NAME [,CODESET] )
       Locale::Codes::LangVar::delete_langvar  ( CODE [,CODESET] )
       Locale::Codes::LangVar::add_langvar_alias  ( NAME ,NEW_NAME )
       Locale::Codes::LangVar::delete_langvar_alias  ( NAME )
       Locale::Codes::LangVar::rename_langvar_code  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::LangVar::add_langvar_code_alias  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::LangVar::delete_langvar_code_alias  ( CODE [,CODESET] )
	   These routines are all documented in the Locale::Codes::API man page.

SEE ALSO

       Locale::Codes
	   The Locale-Codes distribution.

       Locale::Codes::API
	   The list of functions supported by this module.

       http://www.iana.org/assignments/language-subtag-registry
	   The IANA language subtag registry.

AUTHOR

       See Locale::Codes for full author history.

       Currently maintained by Sullivan Beck (sbeck@cpan.org).

COPYRIGHT

	  Copyright (c) 2011-2013 Sullivan Beck

       This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

perl v5.18.2							    2014-01-06					       Locale::Codes::LangVar(3pm)
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