12-16-2014
I thought I had hit a significant milestone at 5000 posts; I've got a long way to go.
Congratulations and keep up the good work.
- Don
This User Gave Thanks to Don Cragun For This Post:
6 More Discussions You Might Find Interesting
1. News, Links, Events and Announcements
Surreal quote from the news link below:
http://www.washingtonpost.com/wp-dyn/articles/A44615-2002Nov12.html (0 Replies)
Discussion started by: Neo
0 Replies
2. What is on Your Mind?
On behalf of the forums, we are so happy to see such an amazingly rescue of the 33 miners. What a great and happy story of human endurance and team work to save miners trapped nearly 700 meters underground.
Bravo Chile !!
We salute you!!! (5 Replies)
Discussion started by: Neo
5 Replies
3. What is on Your Mind?
Hi all,
Please join me to congrats Neo for crossing 10,000 posts count.
I think he is the first to have this count with the longest journey (12 yrs) at unix.com. At least I didn't see any other member with the same or more figures.Mods, please correct me if wrong. Perderabo is likely to be the... (6 Replies)
Discussion started by: clx
6 Replies
4. What is on Your Mind?
Hello All,
Let's join our hands together to appreciate Corona688 for completing and reaching to the landmark of 4000+ THANKS. I do want to appreciate Corona688 on behalf of everyone here in forum for Corona688's continuous effort of posting very useful, full of experience and knowledge posts in... (7 Replies)
Discussion started by: RavinderSingh13
7 Replies
5. What is on Your Mind?
Hello All forum members,
I would like to take this opportunity to THANK RudiC for his tremendous achievement, guidance, help for helping in forums, let us join our hands together for his GREAT achievement :b:
@Rudi sir,
How are you sir?
you ROCK, please keep up the great work sir :b:
... (1 Reply)
Discussion started by: RavinderSingh13
1 Replies
6. What is on Your Mind?
Hello All,
I would like to take this opportunity to CONGRATULATE RudiC sir, (on behalf of all of us); please join your hands with me for congratulating RudiC sir for completing 4500 THANKS in forums. He is a GREAT ASSET in this forums and from years and years he is giving NICE, QUICK, Innovative... (8 Replies)
Discussion started by: RavinderSingh13
8 Replies
LEARN ABOUT DEBIAN
cd-hit-para
CD-HIT-PARA.PL(1) User Commands CD-HIT-PARA.PL(1)
NAME
cd-hit-para.pl - divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs
SYNOPSIS
cd-hit-para.pl options
DESCRIPTION
This script divide a big clustering job into pieces and submit jobs to remote computers over a network to make it parallel. After
all the jobs finished, the script merge the clustering results as if you just run a single cd-hit or cd-hit-est.
You can also use it to divide big jobs on a single computer if your computer does not have enough RAM (with -L option).
Requirements:
1 When run this script over a network, the directory where you
run the scripts and the input files must be available on all the remote hosts with identical path.
2 If you choose "ssh" to submit jobs, you have to have
passwordless ssh to any remote host, see ssh manual to know how to set up passwordless ssh.
3 I suggest to use queuing system instead of ssh,
I currently support PBS and SGE
4 cd-hit cd-hit-2d cd-hit-est cd-hit-est-2d
cd-hit-div cd-hit-div.pl must be in same directory where this script is in.
Options
-i input filename in fasta format, required
-o output filename, required
--P program, "cd-hit" or "cd-hit-est", default "cd-hit"
--B filename of list of hosts,
requred unless -Q or -L option is supplied
--L number of cpus on local computer, default 0
when you are not running it over a cluster, you can use this option to divide a big clustering jobs into small pieces, I suggest you
just use "--L 1" unless you have enough RAM for each cpu
--S Number of segments to split input DB into, default 64
--Q number of jobs to submit to queue queuing system, default 0
by default, the program use ssh mode to submit remote jobs
--T type of queuing system, "PBS", "SGE" are supported, default PBS
--R restart file, used after a crash of run
-h print this help
More cd-hit/cd-hit-est options can be speicified in command line
Questions, bugs, contact Weizhong Li at liwz@sdsc.edu
cd-hit-para.pl 4.6-2012-04-25 April 2012 CD-HIT-PARA.PL(1)