I have downloaded source code for 97 files using:

Code:

 wget -x -i link.txt

then run a rename loop:

Code:

 for file in *
do
   mv $file $file.txt
done

to keep the html tags but make the file a text that can be parsed.

In each of the 97 txt files the gene # is variable, but the gene is associated or should have a corresponding OMIM #. They are all in,

Code:

 C:\Users\cmccabe\Desktop\list\geneticslab.emory.edu.txt\tests_txt

Is there a way to search the source code for these gene names and OMIM #’s?

For example, in the attached file there are 26 genes:

Output (tab-delimited)

Code:

A            B
Gene     OMIM
AKT1	164730
ALK	105590
APC	611731

The gene names seem to be after

Code:

 target = '_blank'>AKT1</a>

and the OMIM # seem to be

Code:

 style = 'margin-bottom:10px;'><a href =

I think

Code:

 sed

can parse html but I am not familiar enough to know how to code it for multiple files in a directory.

Thank you to all for the help .