Sponsored Content
Full Discussion: Sequence generation in shell
Top Forums Shell Programming and Scripting Sequence generation in shell Post 302928299 by Don Cragun on Wednesday 10th of December 2014 03:00:54 PM
Old 12-10-2014
Quote:
Originally Posted by r_t_1601
just tweaking the above a bit

Code:
cut -d"," -f7,8 < file4 | tr ',' ' ' | while read A B; do `echo seq $A $B`; done

Note that in the original sample input in this thread, the comma delimited field 7 and 8 for the 1st line is
Code:
4021375283,4021375682 HPAALI41215

not just 4021375283,4021375682. But, tweaking your suggestion a tiny bit more:
Code:
cut -d"," -f7,8 < file4 | tr ',' ' ' | while read A B junk; do `echo seq $A $B`; done

or getting rid of a process in the pipeline and the unneeded command substitution in the loop:
Code:
cut -d"," -f7,8 < file4 | while IFS=', ' read A B junk; do seq $A $B; done

might do what is wanted. I'm not sure that seq will print numbers in that range correctly. On some systems, the command:
Code:
seq 4021375283 4021375284

will print:
Code:
4.02138e+09
4.02138e+09

So, maybe you want something more like:
Code:
cut -d"," -f7,8 < file4 | while IFS=', ' read A B junk; do seq -f '%.0f' $A $B; done

This User Gave Thanks to Don Cragun For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Sequence number generation on a key column

Hi Folks, Can you help me with this issue: I have to generate the numbers say from 1001 for each record in a file based on a key field, the catch is the generated number should be unique based on key column. (EMP_NUMBER) Example: Input File: EMP_NUMBER EMP_NAME 8908 ... (6 Replies)
Discussion started by: sbasetty
6 Replies

2. Shell Programming and Scripting

ID generation in sequence

i have an xml tag. The value for the tag should be iterated through out the xml document. eg: <data><id><id><name>a</name><addr>aaa</addr><phnumb>3456</phnumb><state>ca</state><city>ny</city></data>... (6 Replies)
Discussion started by: Sgiri1
6 Replies

3. Shell Programming and Scripting

Monitor file generation for an hour using Korn shell script

Hi, I am new to this unix scripting, I got a requirement like.. Files with *.XML extension will be generating in a /home/sample/ folder for every 15 mins. I need to monitor those files in that particular folder for every hour. If no file has been generated in that particular folder for an... (7 Replies)
Discussion started by: siri_886
7 Replies

4. Shell Programming and Scripting

Shell scripting : Help Me for this sequence

I have two input files (given below) and to compare each line of the File1 with each line of File2 starts with '>sample1'. If a match occurs and that matched line in the File2 contains another line or sequence of lines starting with "Chr" they have to be displayed in output file with that sample.... (9 Replies)
Discussion started by: hravisankar
9 Replies

5. Shell Programming and Scripting

Shell scripting for this sequence to compare

I have two input files (given below) and to compare each line of the File1 with each line of File2 starts with '>sample1'. If a match occurs and that matched line in the File2 contains another line or sequence of lines starting with "Chr" they have to be displayed in output file with that sample.... (4 Replies)
Discussion started by: hravisankar
4 Replies

6. Shell Programming and Scripting

Shell scripting for this sequence

KINDLY HELP ME FOR SHELL SCRIPTING FOR THIS TASK. My input file consists of thousands of sequence in this format. The given input file consists of four sequences which are starting with ‘>’ symbol (each sequence shown in different colour for easy understanding). I have to use a command at $... (3 Replies)
Discussion started by: kswapnadevi
3 Replies

7. UNIX for Advanced & Expert Users

Sequence number merged with hypen, shell script

Hello Folks, i have to write shell scripting for given expected output manner. in given input we have to write shell script in such a way that sequence no can b merged/link between start and end digit with hyphen "-" symbol and rest of digit separated by "," Eg : For Input "2 6 7 8 11 12... (9 Replies)
Discussion started by: panchalh
9 Replies

8. Shell Programming and Scripting

find common entries and match the number with long sequence and cut that sequence in output

Hi all, I have a file like this ID 3BP5L_HUMAN Reviewed; 393 AA. AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3; DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot. DT 05-JUL-2004, sequence version 1. DT 05-SEP-2012, entry version 71. FT COILED 59 140 ... (1 Reply)
Discussion started by: manigrover
1 Replies

9. Shell Programming and Scripting

Dynamic file generation using shell

I have to generate the file dynamically from the source file based on the below control file. control_file.txt 1,3,5,-1,8,-1,4 The control file contain the position of column which i required from the source file, Example 1 column ,3 column ,5 column ,blank column(-1 indicates blank... (2 Replies)
Discussion started by: rspwilliam
2 Replies

10. Shell Programming and Scripting

Will shell script executes in sequence

I have a shell script scheduled in cron job to run at every 1 minute which transfers files to remote machine and then move the files to backup folder. cd /u01/app/ftp_tmp sftp user@hostname <<-EOF cd /home/user/ftp mput * bye EOF mv /u01/app/ftp_tmp/* /u01/app/ftp_bkp Now the problem is... (6 Replies)
Discussion started by: Bhavi
6 Replies
All times are GMT -4. The time now is 04:51 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy