You're going about this all wrong.
The files you have attached
windows_annovar.sh
windows_annovar.pl
are the same file. You can't just rename files and expect them to run with different interpreters.
This is calling perl table_annovar.pl to access a database (humandb) I think. Do you have all those perl files installed?? If so, perl needs to know where to find them. The full path to the folder that contains them should be in PATH as well as the full path to the perl modules.
PATH belongs in windows_annovar.sh...not this one. Actually, it belongs in the shell environment.
Get rid of this file.
my requirment is
i have to call a batch file from a c++ program
that batch file is called with the argument as print.txt
print.txt is a text file which should get printed on printer (any printer) when a batch file call is made
1) how to call a batch file in c++
2) how to print the text... (1 Reply)
what is a command to call a batch file from a c++ program
when called with the argument which is a text file, then how to print that text file on a printer.
please help me with code if possible (3 Replies)
EDIT: Is this wrong thread?
Hi I am on an Apple Mac and I am trying to run this batch file on my Mac and was wondering if anyone could tell me what a script that will make this run and work on my Mac. I was hoping that you could tell me the script in the shell format?
So here's the batch... (4 Replies)
Hi
I have to create a windows batch file which will read an input file and remove "double quotes" from each line of the file.
For eg.If input file name is abcd.csv and contents is :
"asasd,123123,213213,asd"
"esfrf,dsfsdf,234324,sdfsdf"
Then the batch file should remove "" from the... (11 Replies)
Hi all
I am using tru64 Unix and I want a ready batch file which makes me to change all user passwords at the same time ,instead of changing everyone separately.
Please could anyone help me to do that.
bye. (1 Reply)
Hello everyone. I am new to shell scripting and i am required to create a shell script, the purpose of which i will explain below.
I am on a solaris server btw.
Before delving into the requirements, i will give youse an overview of what is currently in place and its purpose.
... (2 Replies)
Hi all,
What I would like to achieve is to batch change the code below in every pdf in a given directory (each pdf is uncompressed so that can be easily edited).
An example of the javascript code:
if (this.hostContainer) { try { this.hostContainer.postMessage(pp_216', 15259]);... (3 Replies)
Hi guys,
I need a script to change the file names e.g.:-
below are the mentioned files, i want t0 change the last character of the name 00000.cdr with e.g bep01.smsc.191214210500-00000.cdr to bep01.smsc.191214210500-92311.cdr next file be like bep01.smsc.191214210500-92312.cdr
# ls -ltr... (9 Replies)
In the below perl executes if one file is processed perfect. However, when multiple files are processed in batch which is preferred I get the below error that I can not seem to fix it as the '' necessary for the command to execute, but seem to only work for one -arg option. Thank you :).
... (2 Replies)
Discussion started by: cmccabe
2 Replies
LEARN ABOUT DEBIAN
cpanplus::internals::utils
CPANPLUS::Internals::Utils(3perl) Perl Programmers Reference Guide CPANPLUS::Internals::Utils(3perl)NAME
CPANPLUS::Internals::Utils - convenience functions for CPANPLUS
SYNOPSIS
my $bool = $cb->_mkdir( dir => 'blah' );
my $bool = $cb->_chdir( dir => 'blah' );
my $bool = $cb->_rmdir( dir => 'blah' );
my $bool = $cb->_move( from => '/some/file', to => '/other/file' );
my $bool = $cb->_move( from => '/some/dir', to => '/other/dir' );
my $cont = $cb->_get_file_contents( file => '/path/to/file' );
my $version = $cb->_perl_version( perl => $^X );
DESCRIPTION
"CPANPLUS::Internals::Utils" holds a few convenience functions for CPANPLUS libraries.
METHODS
$cb->_mkdir( dir => '/some/dir' )
"_mkdir" creates a full path to a directory.
Returns true on success, false on failure.
$cb->_chdir( dir => '/some/dir' )
"_chdir" changes directory to a dir.
Returns true on success, false on failure.
$cb->_rmdir( dir => '/some/dir' );
Removes a directory completely, even if it is non-empty.
Returns true on success, false on failure.
$cb->_perl_version ( perl => 'some/perl/binary' );
"_perl_version" returns the version of a certain perl binary. It does this by actually running a command.
Returns the perl version on success and false on failure.
$cb->_version_to_number( version => $version );
Returns a proper module version, or '0.0' if none was available.
$cb->_whoami
Returns the name of the subroutine you're currently in.
_get_file_contents( file => $file );
Returns the contents of a file
$cb->_move( from => $file|$dir, to => $target );
Moves a file or directory to the target.
Returns true on success, false on failure.
$cb->_copy( from => $file|$dir, to => $target );
Moves a file or directory to the target.
Returns true on success, false on failure.
$cb->_mode_plus_w( file => '/path/to/file' );
Sets the +w bit for the file.
Returns true on success, false on failure.
$uri = $cb->_host_to_uri( scheme => SCHEME, host => HOST, path => PATH );
Turns a CPANPLUS::Config style "host" entry into an URI string.
Returns the uri on success, and false on failure
$cb->_vcmp( VERSION, VERSION );
Normalizes the versions passed and does a '<=>' on them, returning the result.
$cb->_home_dir
Returns the user's homedir, or "cwd" if it could not be found
$path = $cb->_safe_path( path => $path );
Returns a path that's safe to us on Win32 and VMS.
Only cleans up the path on Win32 if the path exists.
On VMS, it encodes dots to _ using "VMS::Filespec::vmsify"
($pkg, $version, $ext) = $cb->_split_package_string( package => PACKAGE_STRING );
Splits the name of a CPAN package string up into its package, version and extension parts.
For example, "Foo-Bar-1.2.tar.gz" would return the following parts:
Package: Foo-Bar
Version: 1.2
Extension: tar.gz
perl v5.14.2 2014-09-29 CPANPLUS::Internals::Utils(3perl)