I am trying to check to see if a file exists on a ftp server, well, I know that cant be done, atleast directly, So I came up with this small script
ftp -n $HOST <<END_SCRIPT
quote USER $USER
quote PASS $PASSWD
cd public_html/crap
dir $FILE
quit
END_SCRIPT
Where the $ variable... (2 Replies)
Hi List,
How to read the output of a command executed from a script.
For ex.
sample_scritp.sh
-------------
useradd testuser1
password testuser1
....
.....
--------------
This prompts for "password", and "confirm password", for which i need to give the values from script.
Can... (4 Replies)
i want to redirect output of one command as the command line argument of another script
for example, say i would run this command:
find . -xdev -type f -size +4096 -exec ls -al {} \;
i wan to be able to do something like:
echo +4096 | find . -xdev -type f -size ****** -exec... (3 Replies)
Hi ,
I would like to assign command (with pipe) output to a variable. The code is as follows. The goal of the code is to get the last folder folder with a particular name pattern.
myDate=`ls | grep 2009 | tail -1`
echo "myDate=" $myDate
However, in the presence of the pipe, the code... (3 Replies)
Hi,
I am having a list of directories with different login id's. My requirement is that i need to list the directories of my id and need to delete them. So i am using following code
ls -ltr ¦ grep userid ¦ rm -rf
But this is not working. So is there any way of doing it. Please note... (3 Replies)
xargs work great when a command gives multiple line output which can be input to another. In my case it is not working coz the second command uses two words in it.
$ scr.sh
gives output like
193740
638102
375449
..
..
another command takes these number as inputs. it works great... (1 Reply)
Hi,
I am using below code snippet to echo/display the files found
(matching a pattern from searchstring.out file) and the corresponding owner.
while read j
do
echo "Pattern to search is:- $j"
find / -name "*$j*" |\
while read k
do
echo "File found is:- $k"
owner=$(ls... (9 Replies)
Since output of w command have variable number of columns I want to get the output in pipe delimited format. I tried
export OFS="|"; w
but that does not work.
Any ideas? (4 Replies)
Discussion started by: Soham
4 Replies
LEARN ABOUT DEBIAN
asn2xml
ASN2XML(1) NCBI Tools User's Manual ASN2XML(1)NAME
asn2xml - translate biological data from ASN.1 to XML
SYNOPSIS
asn2xml [-] [-b F] [-e] [-i filename] [-l filename] [-o filename] [-s]
DESCRIPTION
asn2xml converts an NCBI Seq-entry or Bioseq-set from ASN.1 format to an isomorphic XML representation. It differs from asn2asn -x in that
it converts packed sequence data back into human-readable ASCII text.
OPTIONS
A summary of options is included below.
- Print usage message
-b F Input asnfile in text mode
-e Input is a Seq-entry
-i filename
Read ASN.1 from filename (default is stdin)
-l filename
Log errors to filename (default is stderr)
-o filename
Write XML to filename (default is stdout)
-s Input is a Seq-submit
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO asn2all(1), asn2asn(1), asn2ff(1), asn2fsa(1), asn2gb(1), asndhuff(1), gene2xml(1), /usr/share/doc/ncbi-tools-bin/README.asn2xml,
/usr/share/doc/libncbi6/ncbixml.txt.gz
NCBI 2005-05-16 ASN2XML(1)