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Top Forums UNIX for Dummies Questions & Answers Find a string across line break (because of "segmentation fault core dumped") Post 302926341 by derekludwig on Sunday 23rd of November 2014 01:34:37 PM
Old 11-23-2014
Wizard,

Just to confirm, using RS="" was to read in stanzas - groups of lines separated by blank lines. Or are you trying to read in the entire file at once? The latter is what you are trying to do with:
Code:
cat test.txt | xargs |sed -e 's/ //g' > test2.txt

which really should be:
Code:
tr -d '\n' < test.txt > test2.txt

This is because xargs will join the lines of text until the maximum number of arguments or maximum command line length is reached.
Perl's file slurping may be useful here:
Code:
perl -e '$/ = undef; $\ = "\n"; $, = " "; $_ = <>; s{\s+}{}g; push @X, pos while m{jkl}gi; print @X;'

which generates:
Code:
11 20 23 30 38 69 80 92 99 107 121 132

for the followig input file:
Code:
AAAAAGHI
JKLAjKMEFJK
LjklABCDJkLEFGHIJKL

ZZAjdskljfdAAAAGHI
ldjkflfsdkJKLAjKMEFJK
jklfsdkjfsdLjklABCDJkLEFGHIJKL

dAAAAGHI
ldkJKLAjKMEFJK
jklfklAB

---------- Post updated at 01:34 PM ---------- Previous update was at 01:31 PM ----------

Or if you don't mind each indice being on a separate line, this is slightly simpler:
Code:
perl -e '$/ = undef; $\ = "\n"; $_ = <>; s{\s+}{}g; print pos while m{jkl}gi;'

 

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Char(3) 						User Contributed Perl Documentation						   Char(3)

NAME
PDL::Char -- PDL subclass which allows reading and writing of fixed-length character strings as byte PDLs SYNOPSIS
use PDL; use PDL::Char; my $pchar = PDL::Char->new( [['abc', 'def', 'ghi'],['jkl', 'mno', 'pqr']] ); $pchar->setstr(1,0,'foo'); print $pchar; # 'string' bound to "", perl stringify function # Prints: # [ # ['abc' 'foo' 'ghi'] # ['jkl' 'mno' 'pqr'] # ] print $pchar->atstr(2,0); # Prints: # ghi DESCRIPTION
This subclass of PDL allows one to manipulate PDLs of 'byte' type as if they were made of fixed length strings, not just numbers. This type of behavior is useful when you want to work with charactar grids. The indexing is done on a string level and not a character level for the 'setstr' and 'atstr' commands. This module is in particular useful for writing NetCDF files that include character data using the PDL::NetCDF module. FUNCTIONS
new Function to create a byte PDL from a string, list of strings, list of list of strings, etc. # create a new PDL::Char from a perl array of strings $strpdl = PDL::Char->new( ['abc', 'def', 'ghij'] ); # Convert a PDL of type 'byte' to a PDL::Char $strpdl1 = PDL::Char->new (sequence (byte, 4, 5)+99); $pdlchar3d = PDL::Char->new([['abc','def','ghi'],['jkl', 'mno', 'pqr']]); string Function to print a character PDL (created by 'char') in a pretty format. $char = PDL::Char->new( [['abc', 'def', 'ghi'], ['jkl', 'mno', 'pqr']] ); print $char; # 'string' bound to "", perl stringify function # Prints: # [ # ['abc' 'def' 'ghi'] # ['jkl' 'mno' 'pqr'] # ] # 'string' is overloaded to the "" operator, so: # print $char; # should have the same effect. setstr Function to set one string value in a character PDL. The input position is the position of the string, not a character in the string. The first dimension is assumed to be the length of the string. The input string will be null-padded if the string is shorter than the first dimension of the PDL. It will be truncated if it is longer. $char = PDL::Char->new( [['abc', 'def', 'ghi'], ['jkl', 'mno', 'pqr']] ); $char->setstr(0,1, 'foobar'); print $char; # 'string' bound to "", perl stringify function # Prints: # [ # ['abc' 'def' 'ghi'] # ['foo' 'mno' 'pqr'] # ] $char->setstr(2,1, 'f'); print $char; # 'string' bound to "", perl stringify function # Prints: # [ # ['abc' 'def' 'ghi'] # ['foo' 'mno' 'f'] -> note that this 'f' is stored "f" # ] atstr Function to fetch one string value from a PDL::Char type PDL, given a position within the PDL. The input position of the string, not a character in the string. The length of the input string is the implied first dimension. $char = PDL::Char->new( [['abc', 'def', 'ghi'], ['jkl', 'mno', 'pqr']] ); print $char->atstr(0,1); # Prints: # jkl perl v5.8.0 2001-05-27 Char(3)
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