I want to get the information from which read from Column 2 (File1) (eg: Read ID: ERR315389.743357) and retrieve the information from column 2,3 and 4 from (File2). Basically file1 (~42k lines) and file 2 (~700k lines). The desired output will be:
To add the information, I collapse the redundant read ID from file 2 uniq (UNIQ) command and print the count of redundant read ID in the file 1.
Hi Experts.
I need to list the file and the filename comes from the file ListOfFile.txt.
Basicly I have a filename "ListOfFile.txt" and it contain
Example of ListOfFile.txt
/home/Dave/Program/Tran1.P
/home/Dave/Program/Tran2.P
/home/Dave/Program/Tran3.P
/home/Dave/Program/Tran4.P... (7 Replies)
Hi,
I have two files with the format shown below. I need to read first field(value before comma) from file 1 and search for a record in file 2 that has the same value in the field "KEY=" and write the complete record of file 2 with corresponding field 2 of the first file in to result file.
... (11 Replies)
I have the below 2 files:
1) Third field from file1.txt should be compared to the first field of lookup.txt.
2) If match found then third field, file1.txt should be substituted with the second field from lookup.txt.
3)Else just print the line from file1.txt.
File1.txt:... (4 Replies)
Hi Friends,
I'm a great fan of this forum... it has helped me tone my skills in shell scripting. I have a challenge here, which I'm sure you guys would help me in achieving...
File A has a list of job ids and I need to compare this with the File B (*.log) and File C (extend *.log) and copy... (6 Replies)
Hi,
I need help with this-
input.txt :
L B white
X Y white
A B brown
M Y black
Read this input file and if 3rd column is "white", then add specific lines to another file insert.txt.
If 3rd column is brown, add different set of lines to insert.txt, and so on.
For example, the given... (6 Replies)
not getting anywhere with this
an xml file contains multiple clients set up with same tags, different values.
I need to parse the file for client foo, and change the value of tag "64bit" from false to true.
cat clients.xml
<Client type"FIX">
<ClientName>foo</ClientName>... (3 Replies)
The below bash connects to a site, downloads a file, searches that file based of user input - could be multiple (all that seems to work). What I am not able to figure out is how to display on the screen match found or no match found" and write a file to a directory (C:\Users\cmccabe\Desktop\wget)... (4 Replies)
I have a specific set (all ending with .bam) of downloaded files in a directory /home/cmccabe/Desktop/NGS/API/2-15-2016. What I am trying to do is use a match to $2 in name to rename the downloaded files. To make things a more involved the date of the folder is unique and in the header of name... (1 Reply)
I am trying to create a cronjob that will run on startup that will look at a list.txt file to see if there is a later version of a database using database.txt as the source. The matching lines are written to output.
$1 in database.txt will be in list.txt as a partial match. $2 of database.txt... (2 Replies)