Hi experts,
I need urget help! I have the a text file with this format:
Types of fruits
Name of fruits
1,1
Farm_no,1
apple,1
pineapple,1
grapes,1
orange,1
banana,1
2,2--->this is the record seperator
Farm_no,2
apple,1
pineapple,1
grapes,3
orange,2
banana,1
3,3--->this is the... (1 Reply)
Hi experts,
I need urget help! I have the a text file with this format:
Types of fruits
Name of fruits
1,1
Farm_no,1
apple,1
pineapple,1
grapes,1
orange,1
banana,1
2,2--->this is the record seperator
Farm_no,2
apple,1
pineapple,1
grapes,3
orange,2
banana,1
3,3--->this is the... (2 Replies)
this is Korn shell unix.
The scenario is I have a pipe delimited text file which needs to be customized. say for example,I have a pipe delimited text file with 15 columns(| delimited) and 200 rows. currently the 11th and 12th column has null values for all the records(there are other null columns... (4 Replies)
Hi,
I have a comma (,) delimited file, in which few fields are enclosed with in double quotes " ". I have to print the records in the file which donot have expected number of field with the line number.
File1
====
name,desgnation,doj,project #header#... (7 Replies)
Hi All,
I need a unix script to convert .csv files to .skv files (changing a comma delimited file to a semi colon delimited file). I am a unix newbie and so don't know where to start. The script will be scheduled using cron and needs to convert each .csv file in a particular folder to a .skv... (4 Replies)
Hi,
Is there a one-liner that I can use to change a line of text into a comma delimited string?
For example, convert
user1
user2
user3
user4to
user1,user2,user3,user4Currently using while read x, although got the extra comma at the end that I have to remove manually.
Please... (5 Replies)
Hi,
I am wanting to create a script that will construct a SQL statement based on a a space delimited string that it read from a config file.
Example of the SQL will be
For example, it will read a string like "AAA BBB CCC" and assign to a variable named IN_STRING.
I then concatenate... (2 Replies)
I have file in linux with comma delimited and string fields in double quotations ", I need to convert them to pipe delimiter please share your inputs.
Example:
Input:
"2017-09-30","ACBD,TVF","01234",NULL,18,NULL,"686091802","BANK OF ABCD, LIMITED, THE",790456
Output:
... (4 Replies)
Hi,
Apologies in advance to the moderator if I am posting this the wrong way.
I've searched and found the solution to an old post but as it is a very old post, I don't see an option to update it with additional question.
The question I have is in relation to the following post:
How to... (6 Replies)
Discussion started by: newbie_01
6 Replies
LEARN ABOUT DEBIAN
vcf-isec
VCF-ISEC(1) User Commands VCF-ISEC(1)NAME
vcf-isec - create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files
SYNOPSIS
vcf-isec [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files.
Note that lines from all files can be intermixed together on the output, which can yield unexpected results.
OPTIONS -C, --chromosomes <list|file>
Process the given chromosomes (comma-separated list or one chromosome per line in a file).
-c, --complement
Output positions present in the first file but missing from the other files.
-d, --debug
Debugging information
-f, --force
Continue even if the script complains about differing columns.
-o, --one-file-only
Print only entries from the left-most file. Without -o, all unique positions will be printed.
-n, --nfiles [+-=]<int>
Output positions present in this many (=), this many or more (+), or this many or fewer (-) files.
-p, --prefix <path>
If present, multiple files will be created with all possible isec combinations. (Suitable for Venn Diagram analysis.)
-t, --tab <chr:pos:file>
Tab-delimited file with indexes of chromosome and position columns. (1-based indexes)
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
EXAMPLES
bgzip file.vcf; tabix -p vcf file.vcf.gz bgzip file.tab; tabix -s 1 -b 2 -e 2 file.tab.gz
vcf-isec 0.1.5 July 2011 VCF-ISEC(1)
11-05-2014
