Sponsored Content
Top Forums UNIX for Dummies Questions & Answers How to average value if they have the same annotation names? Post 302923545 by Aia on Monday 3rd of November 2014 01:50:36 PM
Old 11-03-2014
I don't know if I missed this part or it was edited:
Quote:
all the other annotation has only one unique value so it will be kept in the output file. So I am expecting the output file is like this below
I am assuming that your file, actually, looks something like:
Code:
CR387793 -0.8
CR387793 -5.5
CR387794 -5.3
CR387795 -0.9
CR387796
AR388755 -3.0
AR388755 3.8
AR388755 4.5

In that case:
Code:
awk 'NF==2{A[$1]+=$2;++D[$1]} END{ for (n in A){print n, A[n]/D[n]}}' file

This User Gave Thanks to Aia For This Post:
 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

average value

If I have a file like this, could anyone please guide me how to find the average value in each metrix. The file has got about 130,000 metrixs. Grid-ref= 142, 235 178 182 203 240 273 295 289 293 283 262 201 176 167 187 187 246 260 282 299 312 293 276 230 191 169 ... (2 Replies)
Discussion started by: su_in99
2 Replies

2. Shell Programming and Scripting

how to average in awk

Hi, I have the data like this $1 $2 1 12 2 13 3 14 4 12 5 12 6 12 7 13 8 14 9 12 10 12 i want to compute average of $1 and $2 every 5th line (1-5 and 6-10) Please help me with awk Thank you (4 Replies)
Discussion started by: saint2006
4 Replies

3. Shell Programming and Scripting

Average in awk

Hi I am looking for an awk script which can compute average of all the fields every 5th line. The file looks: A B C D E F G H I J K L M 1 18 13 14 12 14 13 11 12 12 15 15 15 2 17 17 13 13 13 12 12 11 12 14 15 14 3 16 16 12 12 12 11 11 12 11 16 14 13 4 15 15 11 11 11 12 11 12 11... (6 Replies)
Discussion started by: saint2006
6 Replies

4. Programming

calculate average

I have a file which is 2 3 4 5 6 6 so i am writing program in C to calculate mean.. #include<stdio.h> #include<string.h> #include <math.h> double CALL mean(int n , double x) main (int argc, char **argv) { char Buf,SEQ; int i; double result = 0; FILE *fp; (3 Replies)
Discussion started by: cdfd123
3 Replies

5. Shell Programming and Scripting

Searching for file names in a directory while ignoring certain file names

Sun Solaris Unix Question Haven't been able to find any solution for this situation. Let's just say the file names listed below exist in a directory. I want the find command to find all files in this directory but at the same time I want to eliminate certain file names or files with certain... (2 Replies)
Discussion started by: 2reperry
2 Replies

6. UNIX for Dummies Questions & Answers

Help with load average?

how load average is calculated and what exactly is it difference between cpu% and load average (9 Replies)
Discussion started by: robo
9 Replies

7. UNIX for Dummies Questions & Answers

Find the average based on similar names in the first column

I have a table, say this: name1 num1 num2 num3 num4 name2 num5 num6 num7 num8 name3 num1 num3 num4 num9 name2 num8 num9 num1 num2 name2 num4 num5 num6 num4 name4 num4 num5 num7 num8 name5 num1 num3 num9 num7 name5 num6 num8 num3 num4 I want a code that will sort my data according... (4 Replies)
Discussion started by: FelipeAd
4 Replies

8. Shell Programming and Scripting

Exclude certain file names while selectingData files coming in different names in a file name called

Data files coming in different names in a file name called process.txt. 1. shipments_yyyymmdd.gz 2 Order_yyyymmdd.gz 3. Invoice_yyyymmdd.gz 4. globalorder_yyyymmdd.gz The process needs to discard all the below files and only process two of the 4 file names available ... (1 Reply)
Discussion started by: dsravanam
1 Replies

9. UNIX for Beginners Questions & Answers

Snps annotation

I have the following Snps data CHROM POS ID chr7 78599583 rs987435 chr15 33395779 rs987436 chr1 189807684 rs987437 chr20 33907909 rs987438 chr12 75664046 rs987439 and the following gene data genename name chrom strand txstart txend... (8 Replies)
Discussion started by: marwah
8 Replies

10. UNIX for Beginners Questions & Answers

Help with average calculation.

i have a file with 2 columns. i want to calculate the average of column 1 based on the values of column 2. here's how the file looks like. i want to calculate the sums of numbers corresponding to 1 and then calculate the average. same for numbers corresponding to zero. any help with a code would... (1 Reply)
Discussion started by: onerokeyz
1 Replies
ppmtosixel(1)						      General Commands Manual						     ppmtosixel(1)

NAME
ppmtosixel - convert a portable pixmap into DEC sixel format SYNOPSIS
ppmtosixel [-raw] [-margin] [ppmfile] DESCRIPTION
Reads a portable pixmap as input. Produces sixel commands (SIX) as output. The output is formatted for color printing, e.g. for a DEC LJ250 color inkjet printer. If RGB values from the PPM file do not have maxval=100, the RGB values are rescaled. A printer control header and a color assignment table begin the SIX file. Image data is written in a compressed format by default. A printer control footer ends the image file. OPTIONS
-raw If specified, each pixel will be explicitly described in the image file. If -raw is not specified, output will default to com- pressed format in which identical adjacent pixels are replaced by "repeat pixel" commands. A raw file is often an order of magni- tude larger than a compressed file and prints much slower. -margin If -margin is not specified, the image will be start at the left margin (of the window, paper, or whatever). If -margin is speci- fied, a 1.5 inch left margin will offset the image. PRINTING
Generally, sixel files must reach the printer unfiltered. Use the lpr -x option or cat filename > /dev/tty0?. BUGS
Upon rescaling, truncation of the least significant bits of RGB values may result in poor color conversion. If the original PPM maxval was greater than 100, rescaling also reduces the image depth. While the actual RGB values from the ppm file are more or less retained, the color palette of the LJ250 may not match the colors on your screen. This seems to be a printer limitation. SEE ALSO
ppm(5) AUTHOR
Copyright (C) 1991 by Rick Vinci. 26 April 1991 ppmtosixel(1)
All times are GMT -4. The time now is 05:22 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy