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Shell Programming and Scripting
Combine shell files
Post 302923272 by cmccabe on Friday 31st of October 2014 04:20:51 PM
10-31-2014
Combine shell files
The script below is an attempt to combine 3 shells into 1.
The first part: match.sh
prompts the user for an id of a patient and runs a match script based on the response of "y" or "n". After completing the user is asked if there are additional patients, and based on "y" or "n" a certain action is followed.
The second part: convert2annovar.sh
prompts the user for an id of a patient and runs a conversion script based on the response of "y" or "n". After completing the user is asked if there are additional patients, and based on "y" or "n" a certain action is followed.
The third part: table_annovar
prompts the user for the type of analysis and runs a script based on the response of "y" or "n". After completing the user is asked if there are additional patients, and based on "y" or "n" a certain action is followed.
I attached the .sh file as well. Thank you
.
The first part: match.sh
prompts the user for an id of a patient and runs a match script based on the response of "y" or "n". After completing the user is asked if there are additional patients, and based on "y" or "n" a certain action is followed.
The second part: convert2annovar.sh
prompts the user for an id of a patient and runs a conversion script based on the response of "y" or "n". After completing the user is asked if there are additional patients, and based on "y" or "n" a certain action is followed.
The third part: table_annovar
prompts the user for the type of analysis and runs a script based on the response of "y" or "n". After completing the user is asked if there are additional patients, and based on "y" or "n" a certain action is followed.
I attached the .sh file as well. Thank you
.Last edited by cmccabe; 10-31-2014 at 05:51 PM..
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chsh
CHSH(1) User Commands CHSH(1) NAME
chsh - change login shell SYNOPSIS
chsh [options] [LOGIN] DESCRIPTION
The chsh command changes the user login shell. This determines the name of the user's initial login command. A normal user may only change the login shell for her own account; the superuser may change the login shell for any account. OPTIONS
The options which apply to the chsh command are: -h, --help Display help message and exit. -R, --root CHROOT_DIR Apply changes in the CHROOT_DIR directory and use the configuration files from the CHROOT_DIR directory. -s, --shell SHELL The name of the user's new login shell. Setting this field to blank causes the system to select the default login shell. If the -s option is not selected, chsh operates in an interactive fashion, prompting the user with the current login shell. Enter the new value to change the shell, or leave the line blank to use the current one. The current shell is displayed between a pair of [ ] marks. NOTE
The only restriction placed on the login shell is that the command name must be listed in /etc/shells, unless the invoker is the superuser, and then any value may be added. An account with a restricted login shell may not change her login shell. For this reason, placing /bin/rsh in /etc/shells is discouraged since accidentally changing to a restricted shell would prevent the user from ever changing her login shell back to its original value. FILES
/etc/passwd User account information. /etc/shells List of valid login shells. /etc/login.defs Shadow password suite configuration. SEE ALSO
chfn(1), login.defs(5), passwd(5). shadow-utils 4.5 01/25/2018 CHSH(1)