say i have these many file in a directory named exam.
1)/exam/newfolder/link.txt.
2)/exam/newfolder1/
and i create a tar say exam.tar
well the problem is,
when i read the tar file i dont find any metadata about the directories,as you cannot create a tar containig empty directories.
on the... (2 Replies)
Friends,
I need help with the following in UNIX.
Merge all csv files in one folder considering only 1 header row and ignoring header of all other files.
FYI - All files are in same format and contains same headers.
Thank you (4 Replies)
Hi,
I have an input like this
1 2 3 4
2 3 4 5
4 5 6 7
I would like to count the no. of columns and print a header with a prefix "Col".
I would also like to count the no. of rows and print as first column with each line number with a prefix "Row"
So, my output would be
... (2 Replies)
Hello There...
I have a sample input file ..
number:department:amount
125:Market:125.23
126:Hardware store:434.95
127:Video store:7.45
128:Book store:14.32
129:Gasolline:16.10
I will be doing some manipulations on all the records except the header, but the header should always be... (2 Replies)
I have a fasta file as follows
>sp|O15090|FABP4_HUMAN Fatty acid-binding protein, adipocyte OS=Homo sapiens GN=FABP4 PE=1 SV=3
MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM
KGVTSTRVYERA
>sp|L18484|AP2A2_RAT AP-2... (3 Replies)
I've been struggling with this one for quite a while and cannot seem to find a solution for this find/replace scenario. Perhaps I'm getting rusty.
I have a file that contains a number of metrics (exactly 3 fields per line) from a few appliances that are collected in parallel. To identify the... (3 Replies)
I have a fasta file as follows
>sp|Q8WWQ8|STAB2_HUMAN Stabilin-2 OS=Homo sapiens OX=9606 GN=STAB2 PE=1 SV=3
MMLQHLVIFCLGLVVQNFCSPAETTGQARRCDRKSLLTIRTECRSCALNLGVKCPDGYTM
ITSGSVGVRDCRYTFEVRTYSLSLPGCRHICRKDYLQPRCCPGRWGPDCIECPGGAGSPC
NGRGSCAEGMEGNGTCSCQEGFGGTACETCADDNLFGPSCSSVCNCVHGVCNSGLDGDGT... (3 Replies)
Discussion started by: jerrild
3 Replies
LEARN ABOUT DEBIAN
bio::search::hit::fasta
Bio::Search::Hit::Fasta(3pm) User Contributed Perl Documentation Bio::Search::Hit::Fasta(3pm)NAME
Bio::Search::Hit::Fasta - Hit object specific for Fasta-generated hits
SYNOPSIS
# You wouldn't normally create these manually;
# instead they would be produced by Bio::SearchIO::fasta
use Bio::Search::Hit::Fasta;
my $hit = Bio::Search::Hit::Fasta->new(id=>'LBL_6321', desc=>'lipoprotein', e_val=>0.01);
DESCRIPTION
Bio::Search::Hit::HitI objects are data structures that contain information about specific hits obtained during a library search. Some
information will be algorithm-specific, but others will be generally defined, such as the ability to obtain alignment objects corresponding
to each hit.
SEE ALSO
Bio::Search::Hit::HitI, Bio::Search::Hit::GenericHit, Bio::SearchIO::fasta.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Aaron Mackey
Email amackey-at-virginia.edu
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
_initialize
Function: where the heavy stuff will happen when new is called
AUTOLOAD
Function: Provide getter/setters for ID,DESC,SIZE,INITN,INIT1,OPT,ZSC,E_VAL
perl v5.14.2 2012-03-02 Bio::Search::Hit::Fasta(3pm)