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Full Discussion: Batch or not if/then
Top Forums Shell Programming and Scripting Batch or not if/then Post 302922315 by cmccabe on Thursday 23rd of October 2014 04:33:34 PM
Old 10-23-2014
Code:
 #!/bin/bash
while true
do
        printf "Is this a batch :"
while read id
do
        case "$id" in
        [yY]) echo perl -ne 'chomp; system ("perl table_annovar.pl $_ humandb/ -buildver hg19 -protocol refGene,popfreq_all,common,clinvar,clinvarsubmit,clinvarreference -operation g,f,f,f,f,f -otherinfo")' < file.txt 
                ;;
        [nN]) # code for X
                printf "Enter ID  : " ; read id
                [ -z "$id" ] && break
                [ "$id" = "end" ] && break
                echo perl table_annovar.pl ${id}_matched.avinput humandb/ -buildver hg19 -protocol refGene,popfreq_all,common,clinvar,clinvarsubmit,clinvarreference -operation g,f,f,f,f,f -otherinfo
                ;;
        end)  break ;;
        *)     ;; # Unknown option, do nothing
		esac
		
		printf "Is this a batch :"
done

Code:
  bash ~/test.sh
/home/cmccabe/test.sh: line 22: syntax error: unexpected end of file

I have to get out of the habit of using a windows editor (I do that a lot), why is there a second
Code:
 printf "Is this a batch :"

. The program is written in perl and I am using a shell to make it easier for others to use. Thanks Smilie.
 

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LEARN ABOUT DEBIAN

zhcon

ZHCON(1)							    User Manual 							  ZHCON(1)

NAME

       zhcon - fast CJK console environment for GNU/Linux and BSD

SYNOPSIS

       zhcon [OPTIONS]... [FILES]...

DESCRIPTION

       Zhcon is a fast Linux console system which supports framebuffer device. It can display Chinese, Japanese and Korean double byte characters.

       Supported encodings are: GB2312, GBK, BIG5, JIS and KSC.

       It can also use input methods (table based) from MS pwin98 and UCDOS for MS-DOS.

       -h, --help
	      Print help and exit

       -V, --version
	      Print version and exit

       --utf8 use iconv filter to convert UTF-8 stream from/to system encoding	(default=off)

       --drv=STRING
	      specify video driver (auto, fb, ggi, vga)  (default=`auto')

	      If  a  program  name is given as a command line argument, zhcon will run this program on start instead of a shell, and quit when the
	      program exits.  For example:
	      zhcon screen
	      will run screen in zhcon insteal of default user shell.

CONFIGURATION FILE

       On startup, zhcon first try to load configuration from ~/.zhconrc.  If failed, it will use /etc/zhcon.conf by default. The  configure  file
       has many options that can be used to control the behavior of zhcon. See the comments in the file for instruction on customizing zhcon.

KEY SUMMAY

       CTRL_ALT_H:	    active online help
       ALT_SPACE:	    open/close CJK mode
       CTRL_SPACE:	    open/close input method
       ALT_SPACE:	    show/hide input bar
       CTRL_,:		    toggle Full/Half char mode
       CTRL_.:		    toggle Chinese symbol
       CTRL_F1: 	    set encode to GB2312
       CTRL_F2: 	    set encode to GBK
       CTRL_F3: 	    set encode to BIG5
       CTRL_F4: 	    set encode to JIS
       CTRL_F5: 	    set encode to KSCM
       CTRL_F7: 	    toggle between nativebar and overspot input style
       CTRL_F9: 	    toggle GB2312/BIG5 auto-detect mode
       CTRL_F10:	    menu mode
       CTRL_ALT_1 - CTRL_ALT_9: switch to input method 1 to 9
       CTRL_ALT_0:	    English mode

       History mode keys:
       SHIFT_PAGEUP:	    scroll up half screen in history
       SHIFT_PAGEDOWN:	    scroll down half screen in history
       SHIFT_ARROWUP:	    scroll up one line in history
       SHIFT_ARROWDOWN:     scroll down one in history

SEE ALSO

       /usr/share/doc/zhcon/README.gz, /usr/share/doc/zhcon/manual.ps.gz.

AUTHORS

       ejoy <ejoy@users.sourceforge.net>
       Hu Yong <ccpaging@etang.com>
       Rick Lei <rick@chinaren.com>

       This manual page was written by Aron Xu <happyaron.xu@gmail.com>, for the Debian project (and may be used by others).

Fast CJK console environment					     June 2011								  ZHCON(1)
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