Hi all,
This should be very easy but I can't figure it out...
I have a file that looks like this:
@SRR057408.1 FW8Y5CK02R652T length=34
AGCAGTGGTATCAACGCAGAGTAAGCAGTGGTAT
+SRR057408.1 FW8Y5CK02R652T length=34
FIIHFF6666?=:88@@@BBD:::?@ABBAAA>8
@SRR057408.2 FW8Y5CK02TBMHV length=52... (1 Reply)
I have my file input
Land,A,091374346294,Cathay,165
Island,B,091370291502,Cathay,3325
Island,P,091366545904,Cathay,440
Island,C,091368476591,Cathay,99000
Land,A,091379924879,Cathay,0
Land,P,091378222275,Cathay,245
Water,X,091369911459,Cathay,0
Island,B,091377596759,Cathay,0... (5 Replies)
URGENT HELP IS NEEDED!!
I am looking to move matching lines (01 - 07) from File1 and 77 tab the matching string from File2, to File3.txt. I am almost done but
- Currently, script is not printing lines to File3.txt in order.
- Also the matching lines are not moving out of File1.txt
... (1 Reply)
In the tab delimited files below I am trying to match $2 in file1 to $2 of file2. If a match is found the awk checks $3 of file2 and if it is greater than 40% and $4 of file2 is greater than 49, the line in file1 is printed. In the desired output line3 of file1 is not printed because $3 off file2... (9 Replies)
I have a large XML file that I want to parse, and only print one specific value if two values are met.
This is the code so far:
#!/usr/local/bin/python
import xml.etree.ElementTree as ET
tree = ET.parse('onedb-dhcp.xml')
root = tree.getroot()
# This successfully gets all... (1 Reply)
I am trying to modify and understand an awk written by @Scrutinizer
The below awk will filter a list of 30,000 lines in the tab-delimited file. What I am having trouble with is adding a condition to SVTYPE=CNV
that will only print that line if CI=,0.95: portion in blue in file is <1.9.
The... (2 Replies)
In the awk below I am trying to print only the header lines starting with # or ## and the lines that $7 is PASS and AF= is less than 5%. The awk does execute but returns an empty file and I am not sure what I am doing wrong. Thank you.
file
... (0 Replies)
I am trying to use awk to print lines that satisfy either of the two conditions below:
condition 1: $2 equals CNV and the split of $3, the value in red, is greater than or equal to 4. ---- this is a or so I think
condition 2: $2 equals CNV and the split of $3, the value in red --- this is a... (4 Replies)
I have a directory of files, I can show the number of lines in each file and order them from lowest to highest with:
wc -l *|sort
15263 Image.txt
16401 reference.txt
40459 richtexteditor.txt
How can I also print the number of unique lines in each file?
15263 1401 Image.txt
16401... (15 Replies)
Discussion started by: spacegoose
15 Replies
LEARN ABOUT MINIX
join
JOIN(1) General Commands Manual JOIN(1)NAME
join - relational database operator
SYNOPSIS
join [-an] [-e s] [-o list] [-tc] file1 file2
DESCRIPTION
Join forms, on the standard output, a join of the two relations specified by the lines of file1 and file2. If file1 is `-', the standard
input is used.
File1 and file2 must be sorted in increasing ASCII collating sequence on the fields on which they are to be joined, normally the first in
each line.
There is one line in the output for each pair of lines in file1 and file2 that have identical join fields. The output line normally con-
sists of the common field, then the rest of the line from file1, then the rest of the line from file2.
Fields are normally separated by blank, tab or newline. In this case, multiple separators count as one, and leading separators are dis-
carded.
These options are recognized:
-an In addition to the normal output, produce a line for each unpairable line in file n, where n is 1 or 2.
-e s Replace empty output fields by string s.
-o list
Each output line comprises the fields specified in list, each element of which has the form n.m, where n is a file number and m is a
field number.
-tc Use character c as a separator (tab character). Every appearance of c in a line is significant.
SEE ALSO sort(1), comm(1), awk(1).
BUGS
With default field separation, the collating sequence is that of sort -b; with -t, the sequence is that of a plain sort.
The conventions of join, sort, comm, uniq, look and awk(1) are wildly incongruous.
7th Edition April 29, 1985 JOIN(1)